Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01687 ATGTCTCAACCAAGGCAACGTCAGGTTGTGATGGGTGGTAACAATCCTGACCAATATAATGACACAACATTTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGGAGATCCAAAGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCAGCTATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGAAGAGCAAATTGCAATATTGCTTCTCTTGGTGCAAACAAGAATCGACCACTAACTCTTCAGCATGGTGCAGGAAGGTTCAGGCCTTCACCTGGACTGGTGGCATCACCTGCTTATCATGGTTCTTCAACTCCATTTTTCCATCAACCCACTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACACGTTGTATCCAGCGAGCTATTATAATGTCTATGGAGTTCAACAATTTTCACCTTACTACCCATCCACTGGAGCAGGATTGATCCATAATATCTACCCTTTCTATGGTCAATATGCACAGAATATCCAGGCTCGTGGTTTTGGAGTTCAGTACCCCCAGATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATTTCCTTCTTCAGTGGCAGTGCCAACTACTAGTACAGCAATAGCAGTGACTGCAACCACAACTACAATATCAGCAGCAGGTGTGGCAGTAACAGGAGTTGGTACTTCACAAGCCTCTGGAACAGTTTCTGAACAAAATTCTACTACATCTTGA 849 0.4346 MSQPRQRQVVMGGNNPDQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNIASLGANKNRPLTLQHGAGRFRPSPGLVASPAYHGSSTPFFHQPTRQYTFPYSAYGYSGYSQDTLYPASYYNVYGVQQFSPYYPSTGAGLIHNIYPFYGQYAQNIQARGFGVQYPQMAQFPFLPQHYGSTGILSFPSSVAVPTTSTAIAVTATTTTISAAGVAVTGVGTSQASGTVSEQNSTTS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01687 282 Gene3D - 1 115 IPR012677 -
Rops4g01687 282 CDD RRM_RBM24_RBM38_like 25 100 - -
Rops4g01687 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Rops4g01687 282 SUPERFAMILY RNA-binding domain, RBD 10 121 IPR035979 GO:0003676
Rops4g01687 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 117 IPR000504 GO:0003723
Rops4g01687 282 PANTHER BOULE-RELATED 12 226 - -
Rops4g01687 282 SMART rrm1_1 26 98 IPR000504 GO:0003723
Rops4g01687 282 FunFam RNA-binding protein 24-B isoform X1 12 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01687 Rops-Chr4 40715037 40717803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01687 21 101 C2H2 Transcription Factor Family AT2G19380 43.210 1.21e-15 75.1