Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01686 ATGGGGAAGAAGGGAAGTAGTTCATGGTTGACTGCAGTCAAAAGGGCATTCAGATCTCCAACCAAAGACAGTGACAAAAGAAGTGGTAGAAGAAGAGAGGACTATGATCAAGAAGAAGATGAAGAAAAGAAGAGAGAAAAAAGAAGATGGATTTTTAGGAAACAAGTGAATCATGAAACAGTGAACACTCAACAAACTTCAACAAAATTGAAGCATGATGTGGCTACTGCAACTACTACTGCAAGTGGGGCTTCAAGGACAAACCAAGATCAGAAACATTTACTTGCTGTGGCGGTGGCCACAGCAGAAGCAGCCATGGCCACCGCTCAAGCTGCTGTGGAGGCTACAATGTTGAGAAAACCTTCAAATCATGCTAGGGAGCAGTATGCTGCTACTGTAATCCAAACTGCTTTCAGAGGGTATCTGGCAAGAAGAGCACTTCGTGCACTTAAGGGGTTGGTGAAGTTGCAAGCTTTAGTGAGGGGTCACAATGTTAGGAAGCAAGCAAAGATGACCCTTCGGTGCATGCAGGCTTTGGTTAGAGTACAAGCAAGGGTCCTTGACCAACGCATAAGGTCTTCACATGATGGAAGTAGAAAATCCACCTTCAGTGACACCGCTAGTGTTTGGGAATCACGGTATCTTCAGGACATTTCAGATAGGAAATCAATATCTAGAGAGGGAAGTAGCGTTGCAGATGACTGGGATGAACGTCCACACACAGTTGAAGAAGTCAAGGCCATGTTGCAACAGAGGAAGGAAGCAGCTATGAAGAGGGACAAGTCCTTGTCCCAAGCTTTTTCCCAGCAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAATGAAGATGAGCTTGAAGAGAGACCAAAATGGCTTGACAGGTGGATGGCTACAAAACCATGGGAGAGTAGGGGAAGAGCTTCAACTGATCAAAGAGACCCAATTAAGACTGTGGAAATTGACACATCTCAACCTTATTCATATCTAGGAACAAATTATAGAAGATCACATCCAAATTATCAGTATAACCCACACCACCACCAACCACAAAGACATTCCATTGCTTCACCACTCCACAGAACCCACCAAAATGGATCATCCATTCACCAATCTATTGCAACACCTTCTCCAGCAAAATCAAGACCAATCCAAGTTCGATCTGCGAGCCCCCGGAGTGTTAGAGAAGATAGAAGCTACCACACCTCTCAAACACCAAGCCTGAGGTCTAATTATCACTACATAGGAGGGAACTTGTACCAAAATGGTAGCAGGGTTGGAACAAGTAATGGTGGTGGTGCTACATTGCCTAATTACATGGCAGCAACCGAGTCTGCAAAAGCTAGAATTCGATCACAAAGTGCACCAAGGCAGAGGCCATCCACACCAGAGAGGGATAGAGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCAGATCCTTATAATGTAGGTGTGAGTTATGGAAATTATGGGCATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTTGGTGCATCACATTTTGGGTTGGAGCAGCGGTCCAATTACTCTTCTTGCTGTACTGAGAGTCTTGGTGGTGAGGTTTCTCCTTCTTCAACTGGTGACCTTAGAAGGTGGTTGAGATAA 1629 0.4463 MGKKGSSSWLTAVKRAFRSPTKDSDKRSGRRREDYDQEEDEEKKREKRRWIFRKQVNHETVNTQQTSTKLKHDVATATTTASGASRTNQDQKHLLAVAVATAEAAMATAQAAVEATMLRKPSNHAREQYAATVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSHDGSRKSTFSDTASVWESRYLQDISDRKSISREGSSVADDWDERPHTVEEVKAMLQQRKEAAMKRDKSLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWESRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPHHHQPQRHSIASPLHRTHQNGSSIHQSIATPSPAKSRPIQVRSASPRSVREDRSYHTSQTPSLRSNYHYIGGNLYQNGSRVGTSNGGGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYNVGVSYGNYGHSLRSPSFKSVGASHFGLEQRSNYSSCCTESLGGEVSPSSTGDLRRWLR* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01686 542 ProSiteProfiles IQ motif profile. 151 178 IPR000048 GO:0005515
Rops4g01686 542 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Rops4g01686 542 MobiDBLite consensus disorder prediction 519 542 - -
Rops4g01686 542 SMART iq_5 126 148 IPR000048 GO:0005515
Rops4g01686 542 SMART iq_5 149 170 IPR000048 GO:0005515
Rops4g01686 542 Pfam Protein of unknown function (DUF4005) 390 492 IPR025064 -
Rops4g01686 542 Gene3D - 125 179 - -
Rops4g01686 542 FunFam IQ-domain 11 126 177 - -
Rops4g01686 542 MobiDBLite consensus disorder prediction 1 46 - -
Rops4g01686 542 MobiDBLite consensus disorder prediction 18 46 - -
Rops4g01686 542 MobiDBLite consensus disorder prediction 360 388 - -
Rops4g01686 542 MobiDBLite consensus disorder prediction 60 89 - -
Rops4g01686 542 MobiDBLite consensus disorder prediction 446 480 - -
Rops4g01686 542 PANTHER IQ-DOMAIN 5-RELATED 1 479 - -
Rops4g01686 542 MobiDBLite consensus disorder prediction 360 410 - -
Rops4g01686 542 Pfam IQ calmodulin-binding motif 130 148 IPR000048 GO:0005515
Rops4g01686 542 Pfam IQ calmodulin-binding motif 154 170 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01686 Rops-Chr4 40691902 40694729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01686 9 542 IQD Protein Family AT4G00820 58.845 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01686 - - gmx:100786729 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01686 4 40691902 40694729 Rops4g01686 4 40691902 40694729 ECH