Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01684 ATGTCAGAAGGTGCAGCAATTGATGAGTGTGTGGACTTTGATGAGGAAAATTACATGGAAGAAATGGATGATGATGTTGAAGAAGAACATATAGATGATGATGATGATGGAGTGAATGGAAATGGAAATGAAAGTGAGGAAGAACATGAATATGATGAGTCAGCAGTAGATTCTGGCAGGAAAGAACAGTTGAGTGACATTGCCACGGAGTCGGTAGAAGATGAGCAAAAACCATCTTTCGTTGATGAAGAAGAGAAACAGAAGCATGAGGAACTTCTTGCCCTTCCTCCTCATGGTTCAGAAGTCTTTATCGGTGGACTTCCACGGGATGCATGTGAAGATGATTTGAGGGAATTGTGTGAACCGATAGGTGATATTTTTGAGGTGCGATTAATGAAAGACAAGGACACCGGAGAAGGCAAGGGTTATGCTTTTGTGACTTTTAAAACAAAAACGGTTGCACAAAAGGCCATTGAAGGGTTACACAATAAAGAAATTAAGAGTAAAACATTAAGGTGTTCACTATCAGAGACAAAACAAAGATTGTTCATTGGTAATGTACCAAAAAATTGGAGTGAGGATGAATTTAGGAAAGTCATTGAGGGCGTTGGTCCTGGAGTTGAAAACATTGAGCTCATAACGGACCCTCAAAATCCAAGCAGGAACCGTGGCTTTGCATTTGTCTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAGAAAATGTCAAGTGTGAGTTTTAAGCTGGATGGTAATACCCCTACTGTCACATGGGCAGATCCAAAGAATTCATCTGATCATTCTGCTTCTTCACAGGTCAAAGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAACAACTGAAGGAACTATTTAGTCCTCATGGAGAAGTAATAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCGGAGAGGTCAAGTGCATTAAAGGCTATTAAAGATACAGAGAAATATGAAATTGATGGCCAAGTGCTAGAGGTTGTCCTTGCCAAACCTCAAACCGAGAAAAAATCTGATGGAGGTTATGCACACAATCCTGGACTTCTTCCAGACCATATTCCACATCCGGGTTATGGTGGTGGGTTTCCTAGAAATCTTTACAACTCTTTAGGGGGTGGATATGGTCTTGCTACAGGTTTTCAACAGCCAGTGATATATGGTAGAGGTCCCATGCCAGCAGGAATGCAGATGGTTCCAATGGTATTACCAGATGGTCAAATTGGCTATGTCCTTCAGCAGCCTGGTTTACAGATGCCAGCTCCCCGACTGCCACACAGAATTGATCGTGGCAATGGTCCAAGTGGTCGGCCAGGACGAGGAGGAAGTGGTGGTGGTAGTGATGATGGCAATCGTAGTAAAAGTTATTTCAATGGGAAGTGA 1440 0.4208 MSEGAAIDECVDFDEENYMEEMDDDVEEEHIDDDDDGVNGNGNESEEEHEYDESAVDSGRKEQLSDIATESVEDEQKPSFVDEEEKQKHEELLALPPHGSEVFIGGLPRDACEDDLRELCEPIGDIFEVRLMKDKDTGEGKGYAFVTFKTKTVAQKAIEGLHNKEIKSKTLRCSLSETKQRLFIGNVPKNWSEDEFRKVIEGVGPGVENIELITDPQNPSRNRGFAFVLYYNNACADYSRQKMSSVSFKLDGNTPTVTWADPKNSSDHSASSQVKALYVKNIPENTTTEQLKELFSPHGEVIKVVMPPGKAGGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVVLAKPQTEKKSDGGYAHNPGLLPDHIPHPGYGGGFPRNLYNSLGGGYGLATGFQQPVIYGRGPMPAGMQMVPMVLPDGQIGYVLQQPGLQMPAPRLPHRIDRGNGPSGRPGRGGSGGGSDDGNRSKSYFNGK* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01684 479 Gene3D - 181 261 IPR012677 -
Rops4g01684 479 Gene3D - 263 395 IPR012677 -
Rops4g01684 479 CDD RRM_SF 102 174 - -
Rops4g01684 479 SUPERFAMILY RNA-binding domain, RBD 97 265 IPR035979 GO:0003676
Rops4g01684 479 Gene3D - 11 180 IPR012677 -
Rops4g01684 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 434 - -
Rops4g01684 479 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 181 261 - -
Rops4g01684 479 MobiDBLite consensus disorder prediction 8 52 - -
Rops4g01684 479 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 180 - -
Rops4g01684 479 SMART rrm1_1 101 174 IPR000504 GO:0003723
Rops4g01684 479 SMART rrm1_1 181 258 IPR000504 GO:0003723
Rops4g01684 479 SMART rrm1_1 276 348 IPR000504 GO:0003723
Rops4g01684 479 MobiDBLite consensus disorder prediction 436 479 - -
Rops4g01684 479 MobiDBLite consensus disorder prediction 1 82 - -
Rops4g01684 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 352 IPR000504 GO:0003723
Rops4g01684 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 262 IPR000504 GO:0003723
Rops4g01684 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 345 IPR000504 GO:0003723
Rops4g01684 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 245 IPR000504 GO:0003723
Rops4g01684 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 172 IPR000504 GO:0003723
Rops4g01684 479 MobiDBLite consensus disorder prediction 53 82 - -
Rops4g01684 479 SUPERFAMILY RNA-binding domain, RBD 270 365 IPR035979 GO:0003676
Rops4g01684 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01684 Rops-Chr4 40634124 40642076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01684 102 420 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 1.61e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01684 K13161 - gmx:100800974 690.649