Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01678 ATGGAAGATTTGATCATCTCTCCTTCTTCTTCTTCCTCTTTGGTCTCTCTTCCCCAAGAAAACCCAACAACAACAACATCAGCCCTTCAACAAAAACTTCAATTTTTACTCCAAAGTCAACCTGATTGGTGGGTCTATGCCATTTTTTGGCGAACCACAAAGGATGAAAATGGCAACCTTTACTTATGTTGGGGTGAGGGCCATTTTCAAGGTTCCAAAGAAACTCCCACAAACACCACTACCACCACCGCCACTACTACTACCCCTCCCCACCATAGCCCCATTTCACAAGAGCGAAGAAAGTTCATGACTTTAATCAACGACGACAACAACAACACTTGTACAAACGGCGATGCTGAGTGGTTCTATGTCATGTCGTTGACTCGAACCTTTTCCGTCGGTAATGCTTCTTCTTCTTCCTTACCCGGAAAGGCCTTTGCTTTAGGCTCAGTTCTTTGGTTGAACAGCAAACACGAGCTTCAATTCTACAACTGTGAGAGATCCAACGAAGCACACGTGCACGGGATTGAAACCTTAACTTTCATCCCAACAACAAACGGTGTCGTCGAAATGGGTTCCTATGAAAACATCAAAGAAAACTGGGGTCTTATTCACCATGCCAAGTCCATGTTTGGATCATCAGATCTTGAGCTAGCACCACAAGACAAGAACCTTAACACAATCGAATTCTTCGACAACCGGAACATCTCCTTCGCCGACATCGGCATCGTCGCCGGCGTCCAAGAAAAACAAGACAATAACAAGACCAACAAACAAGGTTCTTCACTACTACAATCTTGTTATGTGGATTCTGAACATTCAGACTCTGATGGTACAGTTTTACCAACCAATAACTCACCCGAGAAAAGAGAAACAAAGAAGAGAGGGAGGAAACCAGTGTTAGGACGCGAAACTCCAATAAACCATGTAGAAGCTGAGAGGCAAAGAAGGGAGAAACTGAACCACAGATTCTATGCTTTAAGAGCTGTGGTACCTAACGTTTCGAGAATGGATAAGGCTTCTCTATTGTCTGATGCAGTGACTTACATCAACGAGCTCAAATCGAAGATTGAGGAGTTGGAGTTACCACAAAAGAAGAAGGTGAAGTTGGAAATGGTGGATAATATGGATAATCAGAGCACAACAACTACTTCCACAGTTGTAGATCAAAAGGGTCCTCATGCTTTTGCTTTTGGTGTTGATGTGAAGATCATAGGACCTGATGCCATGGTGAGGGTTCAATCAGAGAATGTGAACCACCCTGGTGCCAAGTTAATGGGTGCATTAAGGGACTTAGATATTCAGGTTCACCATGCCAGCATGTCATGTGTTAATGATCTTATGGTTCAAGATGTTGTTGTTAAGATTCCTGATGGGATAAGAAGCGAGGAGGGTCTTAAATCTGCAATTGTCATGAGAATGGATCAGTAG 1431 0.4333 MEDLIISPSSSSSLVSLPQENPTTTTSALQQKLQFLLQSQPDWWVYAIFWRTTKDENGNLYLCWGEGHFQGSKETPTNTTTTTATTTTPPHHSPISQERRKFMTLINDDNNNTCTNGDAEWFYVMSLTRTFSVGNASSSSLPGKAFALGSVLWLNSKHELQFYNCERSNEAHVHGIETLTFIPTTNGVVEMGSYENIKENWGLIHHAKSMFGSSDLELAPQDKNLNTIEFFDNRNISFADIGIVAGVQEKQDNNKTNKQGSSLLQSCYVDSEHSDSDGTVLPTNNSPEKRETKKRGRKPVLGRETPINHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVTYINELKSKIEELELPQKKKVKLEMVDNMDNQSTTTTSTVVDQKGPHAFAFGVDVKIIGPDAMVRVQSENVNHPGAKLMGALRDLDIQVHHASMSCVNDLMVQDVVVKIPDGIRSEEGLKSAIVMRMDQ* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01678 476 CDD bHLH_AtAIB_like 302 370 - -
Rops4g01678 476 MobiDBLite consensus disorder prediction 271 315 - -
Rops4g01678 476 MobiDBLite consensus disorder prediction 1 22 - -
Rops4g01678 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 362 IPR036638 GO:0046983
Rops4g01678 476 SMART finulus 310 359 IPR011598 GO:0046983
Rops4g01678 476 MobiDBLite consensus disorder prediction 271 286 - -
Rops4g01678 476 PANTHER MYC 14 473 IPR045084 GO:0003700|GO:0006355
Rops4g01678 476 MobiDBLite consensus disorder prediction 72 96 - -
Rops4g01678 476 Pfam Helix-loop-helix DNA-binding domain 308 353 IPR011598 GO:0046983
Rops4g01678 476 MobiDBLite consensus disorder prediction 287 315 - -
Rops4g01678 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Rops4g01678 476 MobiDBLite consensus disorder prediction 72 93 - -
Rops4g01678 476 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 29 211 IPR025610 -
Rops4g01678 476 Gene3D - 301 369 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01678 Rops-Chr4 40545858 40547549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01678 29 476 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 34.196 2.40e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g01678 bHLH-MYC_N 9.9e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01678 - K13422 gmx:100795733 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01678 4 40545858 40547549 Rops4g01678 4 40545858 40547549 ECH