Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01676 ATGGGCCAGTGCTACGGCAAGACCAACCCCAAGCCGGAAAATGACAAAACGACCGCCACCACCTCAATTGCAGTCACCGGCGACCTCCATCCATCGCCGGCACCGTCCTCCGTCCCCGGTGCCGGGAACGGGTTTCCGTTGGTGAAGGGGACTCCGGCGGCTAGGTCCACCTCCACCACGAGTCCCTGGCCGAGTCCATACCCTCACGGTGGCGTGATGACTCCGTCGCCGGCGAGGGGGTCGTGGACTCCGAGGAGGTTTTTCCGGCTGCCGTTTCCGCCGCCTTCGCCGGCGAAGCATATAACGGCGTTTTTGGCGAAGCGTCTGGGAAAGGTGAAGCTGTCGCCGAAGGAGGGGACGATACCGGAGGAGGAGGGGGTGGCGGAGGAGGAGGAGGCGCCGTTGGATAAGAGCTTTGGGTACAGTAAGAATTTTGGTGCAAAGTATGAGCTTGGGAAGGAAGTGGGAAAAGGGCATTTTGGTCATACTTGTTATGCCAGGGGCAAGAAGGGTGACCTCAAAGACCAACCTGTTGCTGTTAAAATTATTTCCAAGGCCAAGATGACCACAGCAATAGCAATTGAAGATGTTCGTAGAGAGGTGAAGATATTAAAAGCTCTATCTGGCCATAAGCATCTTGTCAAATTTCATGATGCTTTTGAGGATGCCAACAATGTATACGTAGTTATGGAACTGTGCGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGAGAGGAAAGTATACAGAGGAGGAAGCCAAGCTTATAATTTTGCAGATTCTAAGTGCAGTTGCTTTTTGTCATCTTCAAGGCATTGTGCACCGTGACCTGAAACCTGAGAATTTCCTCTTCACTTCAAGAAGTGAAGATGCTGACATGAAGCTTATTGATTTTGGTCTGTCTGACTTCATCCGGCCAGATGAACGGCTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCATATAGTATGGAAGCAGATATATGGAGTATTGGAGTTATTACCTATATATTGTTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTCATTAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCTTCTGTCTCTGTAGAGGCCAAGGACTTCGTGAAAAGGCTCCTCAACAAGGACTACAGGAAAAGAATGACTGCTGTTCAAGCTCTAACTCATCCTTGGTTGAGGGATGATAGCCGTCTCATCCCTTTAGATATATTAGTTTATAAACTAGTGACGGCTTATCTTCATGCAACACCATTCAAACGTGTAGCAGTGAAGGCCCTCTCAAAAGCCTTGACAGAGGATGAATTGCCCTATCTTAGGGCACAATTCAGATTGTTGGAACCAAATAGAGACGGGCACATCTCCCTTGACAATTTCAAAATGGCTCTTGTACGGCATGCAACTGATGCCATGAGGGAGGCAAAGGTTCTTGATATCATACATGCGATGGAACCACTTGCCAATAGAAAGATGGACTTTGAAGAATTTTGTGCAGCTGCAATTAGCACATATCAATTGGAGGCACTTGATGGGTGGGAAGATATTGCCTCCACTGCTTTTGAACATTTTGAGAGAGAAGGCAACCGTCGGATATCGGTTGAAGAATTAGCAACTGAGTTGAATCTTGGTCCTTCAGCTCATTCTATTCTCAAAGATTGGATACGAAGTACTGATGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTGCATGGTGTGACTCCCCGTAGTTCAACCAACAGATACCGTTAG 1806 0.4734 MGQCYGKTNPKPENDKTTATTSIAVTGDLHPSPAPSSVPGAGNGFPLVKGTPAARSTSTTSPWPSPYPHGGVMTPSPARGSWTPRRFFRLPFPPPSPAKHITAFLAKRLGKVKLSPKEGTIPEEEGVAEEEEAPLDKSFGYSKNFGAKYELGKEVGKGHFGHTCYARGKKGDLKDQPVAVKIISKAKMTTAIAIEDVRREVKILKALSGHKHLVKFHDAFEDANNVYVVMELCEGGELLDRILSRRGKYTEEEAKLIILQILSAVAFCHLQGIVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSMEADIWSIGVITYILLCGSRPFWARTESGIFRAVIRADPNFDDLPWPSVSVEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDDSRLIPLDILVYKLVTAYLHATPFKRVAVKALSKALTEDELPYLRAQFRLLEPNRDGHISLDNFKMALVRHATDAMREAKVLDIIHAMEPLANRKMDFEEFCAAAISTYQLEALDGWEDIASTAFEHFEREGNRRISVEELATELNLGPSAHSILKDWIRSTDGKLSLLGYTKFLHGVTPRSSTNRYR* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01676 601 MobiDBLite consensus disorder prediction 10 27 - -
Rops4g01676 601 FunFam CDPK-related kinase 1 447 519 - -
Rops4g01676 601 SMART serkin_6 149 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01676 601 FunFam CDPK-related kinase 1 142 237 - -
Rops4g01676 601 Gene3D Transferase(Phosphotransferase) domain 1 236 419 - -
Rops4g01676 601 Gene3D - 420 591 - -
Rops4g01676 601 SUPERFAMILY Protein kinase-like (PK-like) 143 428 IPR011009 -
Rops4g01676 601 PANTHER SERINE/THREONINE-PROTEIN KINASE 133 573 - -
Rops4g01676 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Rops4g01676 601 Pfam Protein kinase domain 149 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01676 601 FunFam Calcium-dependent protein kinase SK5 321 421 - -
Rops4g01676 601 ProSiteProfiles Protein kinase domain profile. 149 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01676 601 FunFam CDPK-related kinase 3 141 313 - -
Rops4g01676 601 SUPERFAMILY EF-hand 437 589 IPR011992 -
Rops4g01676 601 Gene3D Phosphorylase Kinase; domain 1 145 235 - -
Rops4g01676 601 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Rops4g01676 601 ProSitePatterns Protein kinases ATP-binding region signature. 155 181 IPR017441 GO:0005524
Rops4g01676 601 CDD STKc_CAMK 148 410 - -
Rops4g01676 601 MobiDBLite consensus disorder prediction 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01676 Rops-Chr4 40479538 40489363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01676 62 595 EF-hand Containing Proteins AT3G50530 61.913 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops4g01676 Pkinase 6.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01676 - - gmx:100796256 958.362