Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01675 ATGGGTTGTGGAGAAAAGAGTCCCAGGAGCTTTAATTTGCATCGCCAGCATCATTTCCACCATCATCATCACCATGGTGATGGGAAGAAGCAAGAGTTCAGAGGTGTTCCAAAAGGGTGTATGGCAATCAAGGTTGGTCAAGGAGAAGAGCAACAGAGATTTGTGGTGCCTGTGATGTACTTCAATCACCCTCTTTTCATGCAGTTGCTGAAGGAAGCAGAAGAAGAATATGGGTTTGATCAAAAGGGAACCATAACTATCCCTTGTCATGTGGAGGAATTCAGAAACGTTCAAGGCTTGATTGATAGGGATAAGAATCTCCATCACCACCACCATGTTGGTTGCTTTGGCTTTTGA 357 0.4426 MGCGEKSPRSFNLHRQHHFHHHHHHGDGKKQEFRGVPKGCMAIKVGQGEEQQRFVVPVMYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVQGLIDRDKNLHHHHHVGCFGF* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01675 118 Pfam Auxin responsive protein 30 97 IPR003676 GO:0009733
Rops4g01675 118 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 96 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01675 Rops-Chr4 40470050 40470761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01675 36 114 Calmodulin-binding Proteins AT5G20810 46.250 1.47e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01675 K14488 - cave:132187600 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04285 8 85714669 85715001 Rops4g01675 4 40470050 40470761 PCT