Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01673 ATGTTAGATAGTATGGAATATACTTACTCAGCTGAAGTTGCAGATGCAGAAACTTACAACACTAGTAGCACGACTTCACCATCGGCCATGAGAAAGAAGAAAAGCAAAAACACAAGAAGGTTCAGCAATGAACAAATCAAATCATTGGAATCTATGTTTGAGACTGAAACAAGGCTTGAACCTAGAAAGAAGTTGCAGGTGGCAAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCCATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTTGAGAAAGATTACAGCATGCTTCAAGCCAATTATAACAATTTGGCTTCACGGTATGAAAATCTGAAGAAGGAGAAGCAAACATTGCTAATACAGTTACAGAAGCTGAATGATCTAATACATAAGCCAATAGAGCAAAGACAGAGTTCAACACAAGTTAAAGCAGCAAACAGCACGGACAGTGAATCAGAAAATGGAGCCACCATCAAATGTGAAGCTGAGTTAAAGCCAAGCCCATCTATGGAAAGATCAGAACATGTACTTGGTGTTCTTTCAGATGATGACACCAGCATAAAGGTAGAATACTTTGGCCTGGATGATGAACCTGGCCTTCTGAATTTTGTTGAGCATGGTGATGGTTCATTGACATCACCAGAAGAATGGGGTGCTTTTGAATCAGATGATCTTTTAGGCCAATCAACCAGTGATTACCAATGGTGGGACTTTTGGTCCTAA 735 0.4054 MLDSMEYTYSAEVADAETYNTSSTTSPSAMRKKKSKNTRRFSNEQIKSLESMFETETRLEPRKKLQVARELGLQPRQVAIWFQNKRARWKSKQLEKDYSMLQANYNNLASRYENLKKEKQTLLIQLQKLNDLIHKPIEQRQSSTQVKAANSTDSESENGATIKCEAELKPSPSMERSEHVLGVLSDDDTSIKVEYFGLDDEPGLLNFVEHGDGSLTSPEEWGAFESDDLLGQSTSDYQWWDFWS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01673 244 SUPERFAMILY Homeodomain-like 18 94 IPR009057 -
Rops4g01673 244 MobiDBLite consensus disorder prediction 17 31 - -
Rops4g01673 244 MobiDBLite consensus disorder prediction 17 38 - -
Rops4g01673 244 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Rops4g01673 244 Pfam Homeobox associated leucine zipper 92 132 IPR003106 GO:0006355|GO:0043565
Rops4g01673 244 FunFam Homeobox-leucine zipper protein ATHB-7 20 92 - -
Rops4g01673 244 Gene3D - 19 95 - -
Rops4g01673 244 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Rops4g01673 244 MobiDBLite consensus disorder prediction 140 159 - -
Rops4g01673 244 CDD homeodomain 36 93 IPR001356 GO:0003677
Rops4g01673 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 165 IPR045224 GO:0003700
Rops4g01673 244 Coils Coil 84 132 - -
Rops4g01673 244 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Rops4g01673 244 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Rops4g01673 244 Pfam Homeodomain 39 90 IPR001356 GO:0003677
Rops4g01673 244 SMART HOX_1 35 96 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01673 Rops-Chr4 40357794 40359324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01673 9 244 Homeobox Transcription Factor Family AT2G46680 50.196 1.48e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops4g01673 Homeodomain 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01673 K09338 - gmx:100811208 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01673 4 40357794 40359324 Rops4g01673 4 40357794 40359324 ECH
Rops8g04284 8 85685105 85686593 Rops4g01673 4 40357794 40359324 PCT