Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01672 ATGGCCTCACTCTGGCTAACCATGACTTTCTTTTACTGGTCTCACCCTGGTGGTCCTGCTTGGGGCAAGTACTTCTACTTGACCTGGAGAAAAACCTCAAATAGTACTATTACTACTGTTACCACTACTGGTTCAGACCCCAACCATACGAGGAACCATATAAAACAAATAATTCCTGGTCCCAAAGGTTATCCTTTAATTGGGAGCATGAACCTCATGTCCTCACTCGCACACCACCGTATTGCGGCGGCGGCAGAGGCATGCAAGGCCACGAGGCTCATGGCTTTCAGCCTTGGCGACACACGTGCCATGGTCACGTGCCACCCTGACGTGGCCAAGGAGATTCTCAACAGCTCCGTGTTTGCTGATCGTCCTATTAAGGAATCAGCTTACAGCTTAATGTTCAACAGAGCCATAGGGTTCGCCCCTTATGGTGTTTATTGGAGAACTCTAAGGAAAATCGCCAACAATCACCTCTTTTGCCCCATGCAAATCAAGTGTTCAGAGATTCAGCGTTCAGAAATCGCCACCCAGATGATAAACTTGTTCAAAAATCGCTACCTCCATGGCGGTTTCACTGTTCGTCAAGTGCTTAAAAAAGCTTCACTCAATAACATGATGTGGTCGGTGTTTGGACAAAGGTATAAGCTTGACGAGCCAAACAAGGGAATGGAGGAACTAAGTGGGTTAGTGGAACAAGGTTATGACTTGTTGGGTACCCTTAATTGGGGTGACCATCTTCCTTTTCTTAAAGACTTTGATGCACAAAAAATCCGGTTCACTTGCTGCAAACTTGTTCCTAAGGTGAACCGGTTCGTTAGTACAATAATCGCCGACCACCGAGCCGACACAAACCAAACCAACCGGGATTTCGTTCATGTCTTGCTCTCTCTCAAAGGACCCGAAAAATTGTCTGACTCCGACATGATTGCTGTACTCTGGGAAATGATTTTTAGGGGGACCGACACGGTGGCGGTTTTGATAGAGTGGATACTAGCGAGGATGGTGCTTCATCCTGATGTGCAAAAGAAGGTGCAAAAAGAGCTGGATAAGGTGGCTGGGGAAGGCTCACGCGCCGTCACGGAGGAGGACATGGCGGCGACGGTGTATTTACCGGCGGTGGTGAAGGAGGTTCTGAGGCTGCACCCACCGGGCCCACTTCTCTCGTGGGCCCGTTTGGCCATCACTGATACGACCATTGATGGGTATCACGTGCCCGCGGGGACCACAGCCATGGTTAATATGTGGGCCATAGCAAGGGACCCAGAGGTGTGGAGGGACCCACTTGAATTTAAGCCCGAGAGGTTCATGGGCAAAGAGTCCGAATTCTCAGTTTTCGGGTCGGATCTGAGGCTCGCTCCATTCGGGTCGGGTAGGAGGAGTTGCCCCGGGAAGACCTTGGGTTTCACCACTGTGATCTTCTGGGTGGGTAAGCTTTTGCATGAGTTTGAATGGCTACCGTCTGATGAGAATACCAAGGTTGATCTAACGGAGGTGCTGAGGCTCTCTTGTGAAATGGCTAACCCTCTCAATGTTGAAGTGCGCCCTAGGCGTATTTTAAGTTGA 1566 0.4981 MASLWLTMTFFYWSHPGGPAWGKYFYLTWRKTSNSTITTVTTTGSDPNHTRNHIKQIIPGPKGYPLIGSMNLMSSLAHHRIAAAAEACKATRLMAFSLGDTRAMVTCHPDVAKEILNSSVFADRPIKESAYSLMFNRAIGFAPYGVYWRTLRKIANNHLFCPMQIKCSEIQRSEIATQMINLFKNRYLHGGFTVRQVLKKASLNNMMWSVFGQRYKLDEPNKGMEELSGLVEQGYDLLGTLNWGDHLPFLKDFDAQKIRFTCCKLVPKVNRFVSTIIADHRADTNQTNRDFVHVLLSLKGPEKLSDSDMIAVLWEMIFRGTDTVAVLIEWILARMVLHPDVQKKVQKELDKVAGEGSRAVTEEDMAATVYLPAVVKEVLRLHPPGPLLSWARLAITDTTIDGYHVPAGTTAMVNMWAIARDPEVWRDPLEFKPERFMGKESEFSVFGSDLRLAPFGSGRRSCPGKTLGFTTVIFWVGKLLHEFEWLPSDENTKVDLTEVLRLSCEMANPLNVEVRPRRILS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01672 521 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Rops4g01672 521 Gene3D Cytochrome P450 50 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 SUPERFAMILY Cytochrome P450 58 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 PANTHER CYTOCHROME P450 78A7-RELATED 3 518 - -
Rops4g01672 521 Pfam Cytochrome P450 59 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01672 521 FunFam Cytochrome P450 78A5 50 517 - -
Rops4g01672 521 CDD CYP78 91 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01672 Rops-Chr4 40313595 40315808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01672 4 518 Cytochrome P450 AT2G46660 66.409 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01672 K20619 - gmx:100798388 834.328