Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01664 ATGATGGTTCTAGATGTGGTCACTTCTGGTCCTACCACAACTGCCATTTCTGAAATTGTAGATACCATTGGTGAGTTCCTAGTTTATGCTAGTGATGTCCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCAGCTTACATGGAAAGAATTATGCCCATTTTAAAAGAATTGAATAAAGAAAAAGTCAGCAATTCTGAGACATTCAACCGTGCCATTGAGGTTATGAATCGTGAAATTAAAGAAGCAAAGCTACTAGCTCTACAATGCAGCAAGAAGAGCAAGGTCTATCTCCTAATGAATTGCAGGTCCATTATTACGCGCTTAGAAAACCACACAAAGGAGCTAAGTAAGGCACTTGGTCTTCTTCCTTTAGCCACATCAGGTCTTTCTTCAGGGATAATTAAAGAAATTGAAAAGCTATGTGACAATATGCAGGAAGCTGGGTTTAAGGCAGCTGTAGCAGAAGAAGAGATTCTAGAGAAAATTGAGTCAGGGATAAGGGAAAACAATGTTGATCGTTCCTATGCCAATAATTTGTTGATTCTCATTGCTGAGGCTGTTGGAATTGAAAATGAGAGATCAACAATGAAGATGGAACTTGAAGAGTTCAAGAAAGAAATTGAAAATGATCGCATTAATAAGGAATTGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGCAGCATCATCACCTAGGGAAAGGGAACTCAAATACTTCTCCAAACGCCAATCATTAGGTAGTCAAATCTTGGAGCCTTTACAATCATTTTATTGCCCCATCACACAAGATGTTATGGTGGATCCTGTAGAAACTTCATCAGGACAGACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCAGAAGGAAACAATTTGTGTCCCCGGACCTTTGTTCCTTTAGATACGTCAATTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAAGAAAGAAATACTATTATTACAATTGCTGCAGTGAAAGAAAAAATCAAGTCCGGAGATGATGATGAAGTGCTGCATGGTCTGGGAACTCTTCAGGAATTGAGTGAACAAAAAGACCAACATAGGGAATGGGTGATACTAGATAATTACATACCAATTCTTATCCAAATTCTTGGTTCAAAAAACCGTGATATAAGGAATCATGCTCTTGTCATCCTTTGCATGCTGGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTACAAAGGTTGATAATGCAATTGAATCAATTGTCCATTCTCTTGGACGTCGTATAGGGGAAAGGAAGTTAGCAGTGGCATTACTGCTTGAATTATCCAAATATGATTTGGCACAAGAACACATTGGAAAAGTTCAAAGTTGCATACTGCTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCCAGAGATGCAACAGAGCTATTAGATAATCTTTCATACTCTGATCAGAATGTTATAGAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCAACAGGACCAGATGATGTAAAGATGATTATGGCCAAAACTTTGGCAGAAATGGAGTTAACCGACCACAATAAGGAGTCCTTGTTTGATGGTGGTGTACTGACTCCTCTTCTTCGCTTGTTCTCACACAATGATCATCAAGTGAAAACAGTGGCCATTAAAGCTCTTAGGAATCTATCCAGTTCAAAGAAAAATGGACTAGAAATGGTTAGACAAGGGGCTACAAGACCATTACTTGACTTCCTTTTCCATCGCAGCATAGAAACCTCAAGTTTGTGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTTCATCAACTGTCTCTCAAAATGCCAAAACACCGGTTTTATTACTTGAATCTGATGATGATGTTTTTAACCTTTTCTTTGTAATTAGTATGACACAGCCTGATGTGCAACAAAACATTATCCAGACCTTCTATGCCTTGTGTCAGTCATCCTCGGCTTCATATATCAGGACCAAGCTAAATGAGTGCTCAGCTGTTCAAGAGTTGGTTCGATTGTGTGAGAATGAAAATCTAAACCTACGAGCAAATGCTGTGAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGATGAAGCCATCATACAGGAGAATGTTGATCAGAAATGCATCAATACTTTACTCCAGATCTTACAATCTCCATCTGATGAAGAGGAAATACTTTCTGCTATGGGAATAATATGCCATCTTCCAGAAAATGACCAGATAACTCGATGGCTTCATGATGCTGGTGCACTGCCTGTCATTTGTAAATGTGTCCAAGATGGTAGAGGCAGAGACCTTCAAAGGAATAATTTAGTAGAGAATGCCATTGGTGCCTTATGTCGTTTTACAGTTCCTACAAACTTGGAATGGCAAAAGAGTGCAGCTGAAACTGGGATCATAACTGTTTTAGTGCAGTTGCTTGAAAGTGGAACCACCTTGACAAAACGACATGTGGCACTGTGTCTTTCTCAGTTTGCTAAAAGTTCAATTCGGCTCAGCAGGCCAATACCAAAGCGGAAAGGACTATGGTGCTTCTCAGCTCCTTCAGAAATTAGGTGCAGAGTTCATGGAGGAATATGCACAGTCAAATCATCATTTTGCCTTTTAGAGGCTGATGCAGTGGGACCACTTACAAGGACTCTTGGAGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAAGGTGAAAGACTACAAATTGGTAGTAAAGTGCTTGCAGAAGCAAATGTCATACCACTAATAATAAAATTTCTTAGTTCACCCTCTCCTGGGTTGCAATATAAGTCCCTACATGCTTTGGAAAGGATTTTTAGGATATTGGAATTCAAACTTATGTATGGAGCATCAGCTGAAATGCCACTAGTGGACATAACTCAGAGGGGTGATGATAATGTGAAATCCATGTCAGCTAGAATATTGGCACATCTGAATGTGCTTCATGATCAATCTTCATATTTCTGA 3015 0.391 MMVLDVVTSGPTTTAISEIVDTIGEFLVYASDVLVKKDSFKELAAYMERIMPILKELNKEKVSNSETFNRAIEVMNREIKEAKLLALQCSKKSKVYLLMNCRSIITRLENHTKELSKALGLLPLATSGLSSGIIKEIEKLCDNMQEAGFKAAVAEEEILEKIESGIRENNVDRSYANNLLILIAEAVGIENERSTMKMELEEFKKEIENDRINKELAEAMQMDQIIALLERADAASSPRERELKYFSKRQSLGSQILEPLQSFYCPITQDVMVDPVETSSGQTFERSAIEKWFAEGNNLCPRTFVPLDTSILRPNKTLKQSIEEWKERNTIITIAAVKEKIKSGDDDEVLHGLGTLQELSEQKDQHREWVILDNYIPILIQILGSKNRDIRNHALVILCMLAKDNEEAKERITKVDNAIESIVHSLGRRIGERKLAVALLLELSKYDLAQEHIGKVQSCILLLVTMSSGDDNQAARDATELLDNLSYSDQNVIEMAKANYFKHLLQRLSTGPDDVKMIMAKTLAEMELTDHNKESLFDGGVLTPLLRLFSHNDHQVKTVAIKALRNLSSSKKNGLEMVRQGATRPLLDFLFHRSIETSSLWEDVAAIIMQLASSTVSQNAKTPVLLLESDDDVFNLFFVISMTQPDVQQNIIQTFYALCQSSSASYIRTKLNECSAVQELVRLCENENLNLRANAVKLFSCLVESCDEAIIQENVDQKCINTLLQILQSPSDEEEILSAMGIICHLPENDQITRWLHDAGALPVICKCVQDGRGRDLQRNNLVENAIGALCRFTVPTNLEWQKSAAETGIITVLVQLLESGTTLTKRHVALCLSQFAKSSIRLSRPIPKRKGLWCFSAPSEIRCRVHGGICTVKSSFCLLEADAVGPLTRTLGESDPGVCEASLDALLTLIEGERLQIGSKVLAEANVIPLIIKFLSSPSPGLQYKSLHALERIFRILEFKLMYGASAEMPLVDITQRGDDNVKSMSARILAHLNVLHDQSSYF* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01664 1004 CDD RING-Ubox_PUB 263 312 IPR045210 -
Rops4g01664 1004 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Rops4g01664 1004 SMART arm_5 363 403 IPR000225 GO:0005515
Rops4g01664 1004 SMART arm_5 798 838 IPR000225 GO:0005515
Rops4g01664 1004 SMART arm_5 915 956 IPR000225 GO:0005515
Rops4g01664 1004 SMART arm_5 664 704 IPR000225 GO:0005515
Rops4g01664 1004 SMART arm_5 449 487 IPR000225 GO:0005515
Rops4g01664 1004 SMART arm_5 529 569 IPR000225 GO:0005515
Rops4g01664 1004 SMART arm_5 706 745 IPR000225 GO:0005515
Rops4g01664 1004 SMART arm_5 749 795 IPR000225 GO:0005515
Rops4g01664 1004 SMART arm_5 872 912 IPR000225 GO:0005515
Rops4g01664 1004 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Rops4g01664 1004 Coils Coil 186 220 - -
Rops4g01664 1004 CDD MLKL_NTD 37 127 - -
Rops4g01664 1004 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Rops4g01664 1004 Gene3D - 628 858 IPR011989 -
Rops4g01664 1004 Gene3D - 432 627 IPR011989 -
Rops4g01664 1004 Gene3D - 860 1002 IPR011989 -
Rops4g01664 1004 Gene3D - 13 127 IPR036537 GO:0007166
Rops4g01664 1004 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1004 - -
Rops4g01664 1004 Gene3D - 331 431 IPR011989 -
Rops4g01664 1004 SUPERFAMILY RING/U-box 248 331 - -
Rops4g01664 1004 SUPERFAMILY ARM repeat 335 994 IPR016024 -
Rops4g01664 1004 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 330 IPR013083 -
Rops4g01664 1004 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01664 Rops-Chr4 40124846 40131223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01664 250 1004 U-box Gene Family AT1G76390 28.144 5.09e-59 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01664 - - psat:127076110 1558.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01664 4 40124846 40131223 Rops4g01664 4 40124846 40131223 ECH