Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01661 ATGAGGCCGATTTTTGCTGGGAACTTGGAGTATGATACCCGACAATCGGAGCTTGAACGTTTGTTCTCCAAGTATGGAAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTTTACTATGAGGATGAGCGTGATGCTGAAGAAGCAATCCGTGCCCTTGACAATTTTCCTTTTGGTCATGAAAAAAGACGGCTATCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGACTCAAAGCCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAACTTTGACCCAATTCGTACTAGAGTTCGTGACATTGAAAAACACTTTGAACCTTATGGGAAGGTTCTTCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATAGTGAGAGGGGTGGCAATTATGACAGTCCTAGAAGAGGGGGTTATGAGAGGTCACCCAGTCCAGCTTATCGCAGGCGACCAAGTCCGGACTATGGTCGTCCACGCAGTCCTGTGTATGATAGGTATAATGGACCAGACAGGCGGAGGAGTCCTGATTATGGCAGGCACAAGAGTCCTGAATACGGTCGATATCGCAGCCGTTCACCAATAAGAAGGTCAAGAACTTAA 720 0.4639 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNFPFGHEKRRLSVEWARGERGRHRDDSKPNQRPTKTLFVINFDPIRTRVRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDSERGGNYDSPRRGGYERSPSPAYRRRPSPDYGRPRSPVYDRYNGPDRRRSPDYGRHKSPEYGRYRSRSPIRRSRT* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01661 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Rops4g01661 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Rops4g01661 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Rops4g01661 239 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Rops4g01661 239 CDD RRM2_AtRSp31_like 92 161 - -
Rops4g01661 239 SMART rrm1_1 92 158 IPR000504 GO:0003723
Rops4g01661 239 SMART rrm1_1 3 70 IPR000504 GO:0003723
Rops4g01661 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Rops4g01661 239 MobiDBLite consensus disorder prediction 164 239 - -
Rops4g01661 239 SUPERFAMILY RNA-binding domain, RBD 3 79 IPR035979 GO:0003676
Rops4g01661 239 Gene3D - 83 172 IPR012677 -
Rops4g01661 239 Gene3D - 1 82 IPR012677 -
Rops4g01661 239 SUPERFAMILY RNA-binding domain, RBD 82 184 IPR035979 GO:0003676
Rops4g01661 239 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 235 - -
Rops4g01661 239 MobiDBLite consensus disorder prediction 204 231 - -
Rops4g01661 239 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01661 Rops-Chr4 40104863 40108001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01661 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 22.989 1.43e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01661 K12893 - gmx:100797709 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01661 4 40104863 40108001 Rops4g01661 4 40104863 40108001 ECH