Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01656 ATGGAGGGGATAGCTCCCAATTCATGTGCAAGGCCAGTTTTAGAGAAGAAAGCAAGGCCACAAGAGCAACTGAACTGTCCAAGGTGCAATTCAACCAACACCAAGTTTTGTTATTACAACAACTATAGCCTCACACAACCCAGATACTTCTGCAAGACTTGTAGAAGGTACTGGACAGAAGGTGGATCTCTGAGAAATGTTCCTGTTGGAGGTGGTTCTAGAAAGAACAAGAAGGTAACATCAGCAGCAGCCACAACTTCATCAAAGGTTCCTGACCTAAACCCTCCAACCCTCTCATCAATCTCAGCTTCACAAAACCCTAAAATGCATGGAGGCCAAGATCTTAATCTTGCTTTCCCAACTATGGACAAGTATCATGGCATGTCCCCTTATGTTGAGATGCAAAATGGTGATACCACTCACCAAAGCTCTTCTTCTGCTCCAACTTCTCTTTCAGCTTTGGAGCTACTAAGGTCTAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTCACATGATGCCAAACTCAAATGCCCTTTACCCTTCTGGTGGATTTCCCATGCAAGAAGTTAAACCAAGCCTTGGCTTTTCAGTTGATGGGATTGGAAACAGATCATATGATCAGGTCCAAGAGAATAGTGATGGCAGACTTTTGTTCCCTTTTGGAGATGTCAAGCAACTTTCTGCAGGTGCTGAAGTGCAACATAATAAAGAACAAGGAAATTCAACTGGATATTGGAGTGGGATGATTGGTGAAGGATCATGGTAA 771 0.4371 MEGIAPNSCARPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSAAATTSSKVPDLNPPTLSSISASQNPKMHGGQDLNLAFPTMDKYHGMSPYVEMQNGDTTHQSSSSAPTSLSALELLRSSMASRGLNPYAPHMMPNSNALYPSGGFPMQEVKPSLGFSVDGIGNRSYDQVQENSDGRLLFPFGDVKQLSAGAEVQHNKEQGNSTGYWSGMIGEGSW* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01656 256 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 151 IPR045174 GO:0003700|GO:0006355
Rops4g01656 256 MobiDBLite consensus disorder prediction 65 96 - -
Rops4g01656 256 MobiDBLite consensus disorder prediction 78 96 - -
Rops4g01656 256 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Rops4g01656 256 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Rops4g01656 256 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01656 Rops-Chr4 40055187 40057134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01656 16 256 C2C2-Dof Transcription Factor Family AT3G61850 52.060 3.88e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops4g01656 zf-Dof 2.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01656 - - gmx:778110 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01656 4 40055187 40057134 Rops4g01656 4 40055187 40057134 ECH
Rops8g04268 8 85451617 85453520 Rops4g01656 4 40055187 40057134 PCT