Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01655 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTAGGGTTGCATAGGGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACAAAATATATTCAAGCTCATGGAGAAGGCCAGTGGAAATCACTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGGTTGAGATGGGTGAATTATCTTAGACCAGATATAAAGAGAGGTAACATAACTTCTGAAGAAGATGATCTCATAATCAGAATGCATTCACTTCTTGGAAATAGGTGGTCCTTGATAGCAGGAAGATTACCAGGAAGAACAGATAATGAAATAAAGAATTATTGGAACACCCATCTCAGTAAGAAGCTGAAAAATCAAGGACCAGATGATGAGACAAAAACATGCAATAATCCATCAGATCCTGAACAAGGTACCAAGAAAAAGAAGAATAAAAACAAGAACAAGAAGGACAAGAACAGAGGCAAAAACAAGGCAGAGAAAGAAGAGAAGACTCAAGTTTATCTTCCAAAACCAATTAGAGTAAAGGCTTTATCTTTGCCAAGAACAGATAGTGGTGCCTCCTTCACCTTTGCTTCCAATTCACCTTGTGCATCAACAAACCAAGAAAAGGAACAAAGCCCAGAAACACAAGAAATGACAAACAACATGGGAGAGAATTATGATGATTTTGGAATTTTTGGTGATGACCATGACTTGGTCAACGACAGATTAGCGATGGAATGGCAATCTTATGTTCCCACAGAACATGGCACGTTAGATAAACTCTATGAAGAATACTTGCAGCTCTTAAATGTGGATGATAACCAATATGAATTGGATTCTCATGGAGACATCTTCATTGGAGTGAATCAATAA 855 0.3836 MGRAPCCSKVGLHRGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWVNYLRPDIKRGNITSEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKNQGPDDETKTCNNPSDPEQGTKKKKNKNKNKKDKNRGKNKAEKEEKTQVYLPKPIRVKALSLPRTDSGASFTFASNSPCASTNQEKEQSPETQEMTNNMGENYDDFGIFGDDHDLVNDRLAMEWQSYVPTEHGTLDKLYEEYLQLLNVDDNQYELDSHGDIFIGVNQ* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01655 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops4g01655 284 Coils Coil 141 161 - -
Rops4g01655 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 211 - -
Rops4g01655 284 MobiDBLite consensus disorder prediction 186 207 - -
Rops4g01655 284 MobiDBLite consensus disorder prediction 152 167 - -
Rops4g01655 284 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops4g01655 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops4g01655 284 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops4g01655 284 CDD SANT 16 61 IPR001005 -
Rops4g01655 284 FunFam Myb transcription factor 11 67 - -
Rops4g01655 284 Gene3D - 71 116 - -
Rops4g01655 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops4g01655 284 SMART sant 13 63 IPR001005 -
Rops4g01655 284 SMART sant 66 114 IPR001005 -
Rops4g01655 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops4g01655 284 MobiDBLite consensus disorder prediction 115 167 - -
Rops4g01655 284 CDD SANT 71 112 IPR001005 -
Rops4g01655 284 Gene3D - 14 66 - -
Rops4g01655 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops4g01655 284 FunFam MYB transcription factor 68 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01655 Rops-Chr4 40030969 40032113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01655 1 116 MYB Transcription Factor Family AT5G49330 76.724 8.06e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops4g01655 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01655 K09422 - gmx:100803345 377.867