Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01643 ATGGCACATCTGGAGTGTAATCTCGGAGGTCAAGGGAGTTCTCAACCTGAAAAAGGTTTGAGAGATGATGATCTGTATAGAGAGCTATGGAGGTTGTGTGCAGGACCTTTGGTGGATATTCCCCGAACTGGAGATAGAGTTTTCTACTTCCCTCAAGGTCATATGGAACAACTTCAAGCATCTACGGATCAGGAATTGAACCAGGAAATTCCCCATTTCAATCTTCCATCCAAGATTTTTTGCCGTGTTGTGAACATTCAGTTGTTGGCTGAACAAGAAACTGATGAGGTTTATGCTTGTATCGCGTTGCTTCCAGAATCAGATCAAACTGAGCCTGCAAATCCTGATCCACATCCTTCTGAGGCTCCAAAACAGAAATTTCACTCATTCTGCAAGATATTAACTGCCTCTGATACTAGCACACATGGAGGATTTTCAGTTCTGAGGAAGCATGCTACTGAGTGCCTGCCTCCATTGGACATGACTCAAGCAATCCCAACTCAGGAGTTGGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCATATATATAGAGGTCAGCCGAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTTGCATCCAAAAGATTGGTGGCTGGAGATGCTTTTGTTTTCTTAAGGGGAGAGCATGGGCAGCTGAGAGTCGGTGTTCGACGTTTGGCTCGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGTACCATGTTTTTGGTTTATTACAAGCCTAGGACTAGCCAGTTTATTGTTGGTTTGAATAAATATCTGGAGGCAGTTAACAATAAGTTTTCAGTTGGTATGCGTTTCAAGATGAGATTTGAGGGAGATGACTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGGTGTTGGGGATGTGTCTCCAGAATGGTCAAATTCTCAGTGGCGGTCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGGCCAGATAGAGTTTCTTCTTGGGATATAGAGCCTTTTATAGCTTCTCCTGCTTTGAATGTCACTCAACCAATCTTGAAGGGCAAAAGGTCTAGGCCTACTGATGTTTCATCTTCTGCTGCTTCAGGTTTCTGGTGTCATGGATCTTCCCAGGCTCATGAGCTTACCACCCAATTAGGTGGTGCTGCTGAAGTCCAAAGCAATGAAAATCAGGTTGCATGTTCTCTGAGGCAGAAAGATATTCATAGCAATCCAATTAATACCAACTCCAACAGCTCTAGAGTCCTGGTGGAAGGAACATGGCCTTCTTCACCACACTTGCATGTCACTTGTAGCCTCTTTTCCGATCCCAAAAACAACAAAGTGGTTACTGAAACATCATCTATCACTGGTTATCCTAATGTTTCATCTAGACCAAGTGATGGTCCCCCACGTGATCAAGTGGAAGATGGGAAGAAGACTGAGAATTCCCTAGATTGTTGGTTATTTGGAGTTAATTTGACCAACAACTCTAGCAATGTTATTAGTCCTTCAGAGAAAGAACTGGGATGTCCAAGTCCAACTATTGTTCCTAGTGGTCCCAGAGAATCTATGCCTGCAACAGCTGCATGTGAAACTGAGAGGGTTCAGACTCCCAACTATGCATTGTCCAACAAGGGGCAGAAGCAAATTATTTCTGATCCATCACTAAATGAGTGGCAGAACAAGCAGGCCACCGTACCATCCATGAGGACACGGACTAAGGTGCAAATGCAAGGTATTGCAGTTGGTCGTGCAACTGACTTGACCATGTTGAGTGGCTATGATGATCTCATAGATGAACTTGAGAAGTTGTTTGATATTCAAGGAGAGCTTCGTTCACAAAACACCTGGGCAGTTACTTTCACTGATGATGAAAATGACATGATGCTAGTTGGTGATGATCCATGGCCTGAGTTCTGCAACATGGTGAAGAGGATTTTCATTTGTTCAAGGGAGGACTTGAAGAAGATGAAATGCAAGCTATCAGCTTCTTCATCAGAGGTTGAAGAGACTTTGTTGAGCCCAGATTCACAGAATAGGGATGAGACTCAACAATCTCACATGCCTTGA 2127 0.4401 MAHLECNLGGQGSSQPEKGLRDDDLYRELWRLCAGPLVDIPRTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKIFCRVVNIQLLAEQETDEVYACIALLPESDQTEPANPDPHPSEAPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQAIPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEAVNNKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDVSPEWSNSQWRSLKVQWDEPATIPRPDRVSSWDIEPFIASPALNVTQPILKGKRSRPTDVSSSAASGFWCHGSSQAHELTTQLGGAAEVQSNENQVACSLRQKDIHSNPINTNSNSSRVLVEGTWPSSPHLHVTCSLFSDPKNNKVVTETSSITGYPNVSSRPSDGPPRDQVEDGKKTENSLDCWLFGVNLTNNSSNVISPSEKELGCPSPTIVPSGPRESMPATAACETERVQTPNYALSNKGQKQIISDPSLNEWQNKQATVPSMRTRTKVQMQGIAVGRATDLTMLSGYDDLIDELEKLFDIQGELRSQNTWAVTFTDDENDMMLVGDDPWPEFCNMVKRIFICSREDLKKMKCKLSASSSEVEETLLSPDSQNRDETQQSHMP* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01643 708 Gene3D - 127 231 IPR015300 -
Rops4g01643 708 MobiDBLite consensus disorder prediction 683 708 - -
Rops4g01643 708 SMART B3_2 130 232 IPR003340 GO:0003677
Rops4g01643 708 MobiDBLite consensus disorder prediction 1 20 - -
Rops4g01643 708 SUPERFAMILY CAD & PB1 domains 585 665 - -
Rops4g01643 708 MobiDBLite consensus disorder prediction 470 498 - -
Rops4g01643 708 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Rops4g01643 708 FunFam Auxin response factor 584 677 - -
Rops4g01643 708 FunFam Auxin response factor 291 362 - -
Rops4g01643 708 ProSiteProfiles PB1 domain profile. 589 670 IPR000270 GO:0005515
Rops4g01643 708 MobiDBLite consensus disorder prediction 682 708 - -
Rops4g01643 708 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Rops4g01643 708 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 677 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops4g01643 708 Gene3D - 585 677 - -
Rops4g01643 708 Pfam AUX/IAA family 586 672 IPR033389 -
Rops4g01643 708 FunFam Auxin response factor 128 232 - -
Rops4g01643 708 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops4g01643 708 CDD B3_DNA 128 230 IPR003340 GO:0003677
Rops4g01643 708 MobiDBLite consensus disorder prediction 470 486 - -
Rops4g01643 708 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Rops4g01643 708 Gene3D - 291 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01643 Rops-Chr4 39889345 39894181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01643 25 676 B3 DNA Binding Superfamily AT4G23980 55.053 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops4g01643 AUX_IAA 2.7e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01643 K14486 - gmx:100790981 1207.97