Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01640 ATGAAGATTGAGGTGGGGCTAGGAGGAGGTGGGTTGTGGAATGAAGAAGAAAAGGCCACGGTGGTGGAGGTTTTGGGAGCTAACGCTTTTGATTACTTGGTTGCTAACTCGGTTTCTAATGAGAATCTCTTAATGGCCATTGGAAGTGGTGAGAATCTGCAGAACAAGCTATCGGATCTCGTGGAGCGCCCCAACGTGTCAAACTTCAGCTGGAACTATGCAATCTTCTGGCAAATTTCACAGTCCAAATATGGAGATTGGGTTTTGGGTTGGGGTGATGGGTGCTGTAGGGAGCCAAGGGAGGGAGAAGAGGTTGGAGGAGTAAAAGGGGTTCTCAGCCTTAGCTTTGAGGATGAGAAGCAGCAGAAGATGAGAAAGAGGGTGTTGCAGAAGCTGCACACAACGTTTGGTGGTTCAGATGAGGAAAATTATGCTATTGGGCTTGACCGTGTTACAGACACAGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGTGGACATGGTGGTCCAGGTAAGTCCTTTGCATCTGGGAAGCATTTGTGGCTCTCTGATGCCTTGAAATCTACTTCTGATTACTGTGTAAGGTCTTTCTTGGCTAAATCTGCTGGAATTCAGACTGTTGTTTTAGTCCCTACTGATTTGGGTGTGGTGGAGTTGGGTTCTGTGAGAATTGTGGGAGAGAGCTTTGACTTGCTGCAGGCTGTGAAATCTGTGTTTTCAGCACATTCATCATTCGCCAGGGTTAAGCCAATTTCACCATTGGATGTGGTTAATGAAAAGAGAGATGAGAATGGTCCTTTTTCTAGTTTGGCAATTGGGGATGATAATAATAACAACAATCATCATCGTTATCATCATAATAGAGTAGAAGGAACAGGTGTTCCAAAGATTTTTGGCCAGGACTTGAACTGTGTGACTCATTTTAGGGAGAAACTTGCTGTTAGGAAAACGGAGGAGAGGCCATGGGGAGGTCATCCTAATGGTAGTAATAGCATTAGTTTTCCAAATGGTATTCATGGTTCTAGTTGGGGAACTAGTCAAGCTGTGAGGCAACCTGGTCCTGCTGAAATTTTTGTTACTAGGTCCTCCACAGAGCTAGCCAATGGTGCAAGACATGATTTCTTGCACAACAACTATCAACAACAACGGCAGGTGCAAATGCAAATTGATTTCTCAGGAGTTACGTCAAGGCCTTCTATGAGATCAATCATTGGTGAGTCTGAGCTTTCTGATGTCGAGGGATCATGCAAGGAGGAGAAACCGAGTGCCACCGATGATAGGAGGCCAAGGAAGAGGGGAAGAAAGCCGGCTAATGGAAGGGAAGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGACGTGAGAAGCTGAACCAGCGGTTCTATGCCTTAAGAGCTGTTGTGCCAAATATATCCAAGATGGACAAGGCATCTCTACTGGGAGATGCTATTGCTTACATCAACGAGCTTCAGGCAAAACTGAAGTTCATGGAGTCTGAAAGAGAGAGATTTGGAAGCAGCTCTAGAGATGGATCAGTATTGGAGGCCAACTCAAGAGGAGAAAATGATCAGAATAAGGCTCCTGAAGTTGATATTCAAGCTGCACAAGATGAGGTCATTGTAAAGGTGAGCTGCCCTATTGATGTTCACCCAGTTTCAAAGGTCATTCAAGCATTCAAAGAGGCAGAAATCAATGTTGTAGAGTCCAAACTCTCCACTGCAAATGATTCTGTCATCCACACATTTGTAATTAAATCACAAGGACCTGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCCCAAGAATCCAACCCCTTACAGCCATTATCATCTGTTGGATAG 1857 0.4491 MKIEVGLGGGGLWNEEEKATVVEVLGANAFDYLVANSVSNENLLMAIGSGENLQNKLSDLVERPNVSNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPREGEEVGGVKGVLSLSFEDEKQQKMRKRVLQKLHTTFGGSDEENYAIGLDRVTDTEMFFLASMYFSFPRGHGGPGKSFASGKHLWLSDALKSTSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSVRIVGESFDLLQAVKSVFSAHSSFARVKPISPLDVVNEKRDENGPFSSLAIGDDNNNNNHHRYHHNRVEGTGVPKIFGQDLNCVTHFREKLAVRKTEERPWGGHPNGSNSISFPNGIHGSSWGTSQAVRQPGPAEIFVTRSSTELANGARHDFLHNNYQQQRQVQMQIDFSGVTSRPSMRSIIGESELSDVEGSCKEEKPSATDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKFMESERERFGSSSRDGSVLEANSRGENDQNKAPEVDIQAAQDEVIVKVSCPIDVHPVSKVIQAFKEAEINVVESKLSTANDSVIHTFVIKSQGPEQLTKEKLIAAFSQESNPLQPLSSVG* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01640 618 MobiDBLite consensus disorder prediction 321 353 - -
Rops4g01640 618 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 242 IPR025610 -
Rops4g01640 618 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 444 493 IPR011598 GO:0046983
Rops4g01640 618 Coils Coil 490 510 - -
Rops4g01640 618 MobiDBLite consensus disorder prediction 505 530 - -
Rops4g01640 618 CDD bHLH_AtAIB_like 441 506 - -
Rops4g01640 618 Pfam Helix-loop-helix DNA-binding domain 448 494 IPR011598 GO:0046983
Rops4g01640 618 SMART finulus 450 499 IPR011598 GO:0046983
Rops4g01640 618 MobiDBLite consensus disorder prediction 327 352 - -
Rops4g01640 618 MobiDBLite consensus disorder prediction 408 455 - -
Rops4g01640 618 PANTHER MYC 40 603 IPR045084 GO:0003700|GO:0006355
Rops4g01640 618 FunFam Transcription factor bHLH13 437 511 - -
Rops4g01640 618 Gene3D - 437 509 IPR036638 GO:0046983
Rops4g01640 618 MobiDBLite consensus disorder prediction 414 455 - -
Rops4g01640 618 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 447 507 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01640 Rops-Chr4 39814125 39816799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01640 9 618 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 52.504 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g01640 bHLH-MYC_N 3.8e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01640 - - gmx:100807078 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01640 4 39814125 39816799 Rops4g01640 4 39814125 39816799 ECH
Rops8g04258 8 85193413 85195161 Rops4g01640 4 39814125 39816799 PCT