Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01630 ATGCCGAACCTAAAACGGTGCAAACTCGAGGAACCTAATTCTGAAGGCTCTGGTGCGTGTTCGTCGATTCAGAAGAACCGTAAAGTGAATGGTTTTTACTCTTTAGGTATGCCAGGTGATGCTGAAGATTTCAGTAGTGGTTCTGGTTCTTGGAGCAGTGAAGGTTCTTATTGGGGTGGTGGTGGTAATGGTGAGGTTCAATCCAATTCAACTTCTGCGCCGTTGAATGGAAAAACGACGGTGTTTTACCGTGGCTCCGAACAGCCTCGGCCTCCATTATTGCGGTCTTCGCGTGGCCGCCTTCAGATGCTTCCTTCCAGGTTCAGTGATTCGGTTCTTGTTACGTGGAAGAATCGAGGAATCAAAACGGAGGAGGGAGATTCCAGCCTTGAAGTTGAAAAGAATTTTCTTGAATTTGAGAGGACTGGAATTAGTGCGGAGGGATTTGTAAGACTGGAGAAGAGTGATAGCCATGAGTTGAAAAGTTCTGTTGTGAAGGTTGACGAAAGGTTGTGTGATGATTCGTCAAGTATTGGTAGAAGGAGTTTGAAGACTGAGAGTAACACTTCTGGTCTCAGTTTTGAAGGTGTTGATCAAAAGCCTAATGGGAATGTTGGAAAAAGGAAAGAGATTTATAAGCCAGAGGATTTTGCTTTGGGTGATATAGTTTGGGCTAAATGTGGGAAGAGATATCCAGCTTGGCCTGCTGTGGTGATTGATCCCATCTTGGAGGCTCCTAAATCCGTTCTTAGCTGTTGTGTTCCTGGTGCACTTTGTGTGATGTTTTTTGGTTATTCAAAAAATGGAACGCAAAGGGACTATGCTTGGGTGAAGCAGGGAATGATTTTCCCCTTCTTGGAATTCATGGACAGATTCCAGGGGCAGACCCAGTTATACAGGAGCAAACCAAGTGACTTTCGGATGGCATTGGAGGAGGCCATGTTGGCAGAAGATGGTATTCTGGAATCACAGCTGGGACCAGAAGAAGTAACTAATGTAAAATCTCATTCCAACAGACTTACAGAGGCCACGGTTGTTGATCAGGAATATTACTGCCAGAATCAGGACACAAGATATTGTGCTGGCTGTGGTTCAATGCTGCCATGCAAAACCATTAAGAAGATTAAGGATTCAAGTTATGCTCCTCCATTTTATTGCAGACATTGTGCTAAGTTAAGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATTTCCAGCAAACTTTTCAAGGATCTGGAAAATATAGATTACTATTGTCCAGATTGCAAGGGAAAGTTCAATTGTAAGTTAGCATCACAAACGTCCAAGTTGAAAATCAAATCAGTAGAGAATTGCCAAATACCAGGGATACCTGAGAAGGTATTGGTGGTGTGCAATGGAATGGAAGGAATATACATCCCAAAGCTTCATTTAGTTATGTGCAAGTGTGGCTCTTGTGGTTCAAGGAAGCAGACACTGAGTGAATGGGAAAAGCATACAGGTTGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTGAAAAGCACAATGCTGCCCCTAGAAAAATGGATTACAGAGCACATTTCACAAGATGGAATTCCCCAGCAGTTAGATCAGCAGCAGGTGCTTGCTTTTTTGCAAGAGAAATATGAGCCAGTTCATACAAAATGGACAACAGAAAGATGTGCAGTTTGCCGATGGGTTGAAGATTGGGAAGATAACAAGATTATTATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGCATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGCGAAACTCCTGATGTTGAGAGGGAGTGTTGCCTCTGTCCAGTAAAAGGTGGCGCTCTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCTGAAGTTGTTTTCCAAAACCACGAGGCCATGGAACCTGCCTTAGGCATTCTTAGAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTGATTTGTAAGCAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGCGCATCAAGAGCAGGATATACCATGGAATTGCATTCTATGGAGAAGAATGGGACTCAAATAACAAAAAAGCTAATTTATTGTGCAGTTCACAGAGTCCCAAACCCAGATTCAGTACTGGTTGTACATACACCCCTGGGGATTTTCTCTCCCAGAACTTCACTTCAAAATAATAAGCGATGCTTTCGGGGATCAAGGCTGGTTTCATCAAAGAATATAGAGCTTAATGAATCTTCAACCACCCAAGATGACAGGGTTGAACCACTGTCTGCTGCCAGATGTCGTGTGTACCGGAGGTCTCCTAATACGAGGGCTGATGTGCCAATAATTCACTTGCTGAGGGGACCTAGCCTTCATTCTTTAGGTTCAATAACTCAATTGAACAGCTATAAGGATGATGAAGATTCTAAAGTATTTACTTCTTTCAAGGAACGTCTTCACCATTTACAGAAAATGGAAAAACTTAGAGTTTGCTTTGGAAAATCTGGTATTCATGGATGGGGTCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTCGTTGAGTATCGGGGTGAGCAGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAATACCGTTCAGATGGCAAAGATTGCTATCTGTTCAAGATCAGCGAGGAAGTGGTAATAGATGCAACACACAAGGGCAATATAGCACGTTTGATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGTTTGGGTAATCAGGAGAGCCGGATTGTTCTTATTGCCAAAACCAATGTATCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTGAAAGTTCCCTGCCTTTGTAAAGCCGCTAATTGTAGGAAATTTATGAACTAG 3042 0.426 MPNLKRCKLEEPNSEGSGACSSIQKNRKVNGFYSLGMPGDAEDFSSGSGSWSSEGSYWGGGGNGEVQSNSTSAPLNGKTTVFYRGSEQPRPPLLRSSRGRLQMLPSRFSDSVLVTWKNRGIKTEEGDSSLEVEKNFLEFERTGISAEGFVRLEKSDSHELKSSVVKVDERLCDDSSSIGRRSLKTESNTSGLSFEGVDQKPNGNVGKRKEIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILEAPKSVLSCCVPGALCVMFFGYSKNGTQRDYAWVKQGMIFPFLEFMDRFQGQTQLYRSKPSDFRMALEEAMLAEDGILESQLGPEEVTNVKSHSNRLTEATVVDQEYYCQNQDTRYCAGCGSMLPCKTIKKIKDSSYAPPFYCRHCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENIDYYCPDCKGKFNCKLASQTSKLKIKSVENCQIPGIPEKVLVVCNGMEGIYIPKLHLVMCKCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWITEHISQDGIPQQLDQQQVLAFLQEKYEPVHTKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKHVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVVFQNHEAMEPALGILRIPPNSFVKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYTMELHSMEKNGTQITKKLIYCAVHRVPNPDSVLVVHTPLGIFSPRTSLQNNKRCFRGSRLVSSKNIELNESSTTQDDRVEPLSAARCRVYRRSPNTRADVPIIHLLRGPSLHSLGSITQLNSYKDDEDSKVFTSFKERLHHLQKMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGEQVRRSVADLREAKYRSDGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIMSLGNQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAANCRKFMN* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01630 1013 ProSiteProfiles Extended PHD (ePHD) domain profile. 633 748 IPR034732 -
Rops4g01630 1013 ProSiteProfiles Zinc finger PHD-type profile. 579 630 IPR019787 -
Rops4g01630 1013 FunFam Histone-lysine N-methyltransferase 631 750 - -
Rops4g01630 1013 SMART set_7 871 994 IPR001214 GO:0005515
Rops4g01630 1013 Pfam PHD-zinc-finger like domain 635 747 - -
Rops4g01630 1013 SUPERFAMILY FYVE/PHD zinc finger 579 644 IPR011011 -
Rops4g01630 1013 ProSiteProfiles PWWP domain profile. 219 288 IPR000313 -
Rops4g01630 1013 ProSiteProfiles SET domain profile. 871 988 IPR001214 GO:0005515
Rops4g01630 1013 SMART PWWP_4 217 286 IPR000313 -
Rops4g01630 1013 ProSiteProfiles Zinc finger PHD-type profile. 396 452 IPR019787 -
Rops4g01630 1013 Pfam SET domain 882 987 IPR001214 GO:0005515
Rops4g01630 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 455 IPR013083 -
Rops4g01630 1013 MobiDBLite consensus disorder prediction 45 75 - -
Rops4g01630 1013 CDD PWWP_AtATX3-like 220 319 - -
Rops4g01630 1013 Pfam PHD-finger 594 628 - -
Rops4g01630 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 630 IPR013083 -
Rops4g01630 1013 SMART PostSET_3 997 1013 IPR003616 -
Rops4g01630 1013 SUPERFAMILY FYVE/PHD zinc finger 396 456 IPR011011 -
Rops4g01630 1013 CDD PHD_ATX3_4_5_like 581 627 IPR042011 -
Rops4g01630 1013 Gene3D - 207 322 - -
Rops4g01630 1013 PANTHER PHD FINGER PROTEINS 2 990 - -
Rops4g01630 1013 CDD PHD_TCF19_like 399 449 - -
Rops4g01630 1013 SUPERFAMILY SET domain 864 1010 IPR046341 -
Rops4g01630 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 749 IPR013083 -
Rops4g01630 1013 MobiDBLite consensus disorder prediction 43 75 - -
Rops4g01630 1013 ProSitePatterns Zinc finger PHD-type signature. 582 627 IPR019786 -
Rops4g01630 1013 MobiDBLite consensus disorder prediction 1 22 - -
Rops4g01630 1013 Pfam PHD-finger 398 451 IPR019787 -
Rops4g01630 1013 FunFam Histone-lysine N-methyltransferase 845 1013 - -
Rops4g01630 1013 MobiDBLite consensus disorder prediction 182 207 - -
Rops4g01630 1013 SMART PHD_3 398 450 IPR001965 -
Rops4g01630 1013 SMART PHD_3 692 748 IPR001965 -
Rops4g01630 1013 SMART PHD_3 581 628 IPR001965 -
Rops4g01630 1013 MobiDBLite consensus disorder prediction 182 197 - -
Rops4g01630 1013 CDD SET_SETD1-like 860 1009 - -
Rops4g01630 1013 Pfam PWWP domain 220 316 IPR000313 -
Rops4g01630 1013 SUPERFAMILY Tudor/PWWP/MBT 210 322 - -
Rops4g01630 1013 Gene3D SET domain 844 1013 IPR046341 -
Rops4g01630 1013 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 4 1013 IPR025780 -
Rops4g01630 1013 ProSiteProfiles Post-SET domain profile. 997 1013 IPR003616 -
Rops4g01630 1013 CDD ePHD_ATX3_4_5_like 636 747 IPR041955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01630 Rops-Chr4 39661277 39671192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01630 354 423 EF-hand Containing Proteins AT5G28340 55.714 3.23e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops4g01630 zf-HC5HC2H_2 2.8e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01630 - - gmx:100793624 1649.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01630 4 39661277 39671192 Rops4g01630 4 39661277 39671192 ECH