Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01628 ATGGCCATCTTGAAAGTCCTTTTTCACTTCTTCATCTTCCCTGTCATATATGCCTCAAATGGTTGCCAATTTTCTTTATGTGGTAACAATAGTACCCTTATTCGTTTCCCCTTTCGACTAGAAGGTGAGCAAGATCCTTCTTGTGGCTATCCTGGTTTCAACTTAATTTGTACGAATGATAGCAAAACAGTCCTAAAACTTCCATACTCTGGAGAATTCCATGTTGGAAACATAAATTATCTCACACAACAGATACATGTCTACGACCCTGATGGTTGCCTTCCGAGACGTCTTCTAAGCCTCAATTTTTCAGGTTCTCCTTTCATTGCCACTTTTAGTCGTAACTATACCTTCTTAAGCTGCTCATCTCAGAACGCAGGGTCAGAATTTATTCCCATTGACTGCCTAAGAAATTCCACAAATTTTGTATATGCCATTCCTTCAGTGAACTTGGCCAATTCATTGCCTCAGTCTTGCTATGTTATGAAAAGGCTTTCAGTTCCAATTGCAAGGCCAGGATTGTATGAGGAAAATCTCAGAGACGACCTTAGTGAAGAACTTCGATTAACATGGGATGAACCTTACTGCAGATATTGCGAATCACAGAAGCTAGCGTGTGGATTTGAGAGCAATAACAGCAATCGAATTCTCTGTTTCTCTGATCACCAAACAGGTAATTCACATCATGGTTTTCGAGTTTTCAGAATCATCATATTATGCGTTATTGTACCAGCTGGCATCCTTGTTATGCTGATTGGAACCTCTGTGTGCTACCGTGACAGAATATCCAGCAATACTGCTTCTCAGAGGTCAGGTCCATCTGCAATATCACCACAACCTGATATAGTGATTACTACGGGTCTTGATGAGTCCACCATTGAATCTTATGAGAAGGTAGTACTTGGAGAGAGTAGAAGGGTGCCTGGACCCAATGATGGTTGTTGTTGGATATGCTTATCTGAGTATAACAGCAAAGAGACAATCAGATGCATCCCTGAATGCAAACACTGTTTCCATGCTGACTGCATAGATGAGTGGCTTCGCATGAACACCACATGCCCAGTTTGTCGAAACTCTCCCTCTCCCTCTCCTTCTCATGTTCTTGTTATATCAAGTAACCCTTGA 1125 0.4151 MAILKVLFHFFIFPVIYASNGCQFSLCGNNSTLIRFPFRLEGEQDPSCGYPGFNLICTNDSKTVLKLPYSGEFHVGNINYLTQQIHVYDPDGCLPRRLLSLNFSGSPFIATFSRNYTFLSCSSQNAGSEFIPIDCLRNSTNFVYAIPSVNLANSLPQSCYVMKRLSVPIARPGLYEENLRDDLSEELRLTWDEPYCRYCESQKLACGFESNNSNRILCFSDHQTGNSHHGFRVFRIIILCVIVPAGILVMLIGTSVCYRDRISSNTASQRSGPSAISPQPDIVITTGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETIRCIPECKHCFHADCIDEWLRMNTTCPVCRNSPSPSPSHVLVISSNP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01628 374 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Rops4g01628 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 362 IPR013083 -
Rops4g01628 374 Pfam Wall-associated receptor kinase C-terminal 155 221 IPR032872 -
Rops4g01628 374 SMART ring_2 315 356 IPR001841 -
Rops4g01628 374 Pfam Ring finger domain 315 357 IPR001841 -
Rops4g01628 374 SUPERFAMILY RING/U-box 308 361 - -
Rops4g01628 374 CDD RING-H2_EL5-like 314 357 - -
Rops4g01628 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 361 IPR046948 -
Rops4g01628 374 ProSiteProfiles Zinc finger RING-type profile. 315 357 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01628 Rops-Chr4 39649245 39651844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01628 27 362 C3H Transcription Factor Family AT2G25410 46.199 1.69e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01628 - - aprc:113851081 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01628 4 39649245 39651844 Rops4g01628 4 39649245 39651844 ECH
Rops8g04242 8 85049788 85051303 Rops4g01628 4 39649245 39651844 PCT