Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01626 ATGACTGAAAAGGGAAAGAAATTTGTGAGATTTGAAGATTGGAGGTCAGAGTCATCTGTAAGCATTGAGCAGAATGATTCTTCTAGGGATGGATTTCTTAAAAGAAAAGTTAAATCAAGTGTAAGTCCACTAAATGATGGATCAGTAAAAAAATTGGCTTCTAGGTGCAATGTTGTGCTTGATCCACAAGGGCCACTACTTCAGAAATGGAACAAAATCTTTGTAATAACGTGTGTGATGGCAATCTCTGTGGACCCTTTGTTCTTTTACATCCCTGTGATTAATGACAAGGGAAAATGCCTTGATTTGAATGGAACATTGAAGATTACTGTTAGTGTTCTTCGTACATTCTTGGATCTTTTCTACGTTCTTCACATCATCTTTCAGTTTCGAACTGGGTTTATTGCCCCTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTCAGGATTCTAGGGACATAGTGATGAGATACTTAAGTTCTTACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATGATTCCTATCGGAAAATGCTCAGTTCCATATGCAGCAAAGGATTTGGTGAAGTATACAATAATAACCCAGTATGTGCCAAGACTTCTGCGGATCTATCCATTGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTACATGCTAGCCAGTCATGTAGTTGGAGCTTTCTGGTATCTGTTTTCAGTAGAATCAGAGGTGCGGTGCTGGCGCAGACAGTTGAAGAATATTACAATCTCTCATGAGTACTACCTGAGCTGTGGACATGGCAATGATAATGTTCGATCAGTTCTCAGTAATCCTGCTACTTGCCCTTACAATGATACTGATAGCATTGAAGACCCAAAAGTTTTCAATTTTGGAATATTTATAGATGCTATGAAGTCTCGTATGGTAGAATCAAGTACGGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTCTTGGGCAAGACCTCAAAACAAGTACTTATGTTGGGGAGATAATCTTTTCTATCTTCATTGCCGCCTTTGGATTGGTGCTATTCTCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCGGAACAATGGATGTCCCACAGAATGCTACCTGACTTCTTGAAGGAAAGAATTAGACGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAAGAGACATTAATTCGCAACCTCCCTAAAGATCTCAGAAGGGACATAAGGCGTCATCTTTGCTTAGAGTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAAACAGTTGTTGGATGCAATGTGTGATAGATTGAAGCCAGTCCTTTATACAGAGAAAAGTTACATTGTTAGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGGAAAACTTGCTACTGTCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCAGAGCTCAAGGCTGGTGACTTTTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCCACCTCCTCCCCAAATCTACCCATTTCAACTAGAACAGTTGAAACTATTTCAGAAGTTGAAGCCTTTGCTCTCACGCCTGATGACTTGAAGTTTGTTACCTCCCAATTTAGACGTCTTATAAACAGCAACCAACTCCAGCACACTTTCAGGTTCTATTCCCTACAATGGAGGACATGGGCAGCCTGTTTCATACAAGCAGCTTGGCGTAGATACAGAAAAAAGAAGATAGCGAGATCATTACGTGAAGCAGAAGAAAGGCTAAATACTTCTGAAAATGAGGAAGTGTCCTCACCAAGCTTAGGTGCCGCTGTATATGTATCAAGGTTTGCATCCAATGCATTAAGGCCCTTGAGAGGCAAACGCAATAAAATGCCACAAACACCAAAATTACTACTACCCCTGATGCCTCAGAAGCCAGCTGAGCCGGATTTCACTGCTCAAAAAGACTAG 2091 0.4036 MTEKGKKFVRFEDWRSESSVSIEQNDSSRDGFLKRKVKSSVSPLNDGSVKKLASRCNVVLDPQGPLLQKWNKIFVITCVMAISVDPLFFYIPVINDKGKCLDLNGTLKITVSVLRTFLDLFYVLHIIFQFRTGFIAPSSRVFGRGELVQDSRDIVMRYLSSYFIIDILSIIPLPQMVILAMIPIGKCSVPYAAKDLVKYTIITQYVPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESEVRCWRRQLKNITISHEYYLSCGHGNDNVRSVLSNPATCPYNDTDSIEDPKVFNFGIFIDAMKSRMVESSTDFPQKFFYCFWWGLRNVSSLGQDLKTSTYVGEIIFSIFIAAFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIRRHLCLELLKKVPMFENMDKQLLDAMCDRLKPVLYTEKSYIVSEGDPVDEMLFIMRGKLATVTTNGGRTGFFNSSELKAGDFCGEELLTWALDPTSSPNLPISTRTVETISEVEAFALTPDDLKFVTSQFRRLINSNQLQHTFRFYSLQWRTWAACFIQAAWRRYRKKKIARSLREAEERLNTSENEEVSSPSLGAAVYVSRFASNALRPLRGKRNKMPQTPKLLLPLMPQKPAEPDFTAQKD* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01626 696 Coils Coil 620 640 - -
Rops4g01626 696 Gene3D - 72 391 - -
Rops4g01626 696 FunFam Cyclic nucleotide-gated ion channel 1 394 458 - -
Rops4g01626 696 SUPERFAMILY Voltage-gated potassium channels 61 389 - -
Rops4g01626 696 Gene3D Jelly Rolls 465 585 IPR014710 -
Rops4g01626 696 MobiDBLite consensus disorder prediction 664 696 - -
Rops4g01626 696 Pfam Cyclic nucleotide-binding domain 487 577 IPR000595 -
Rops4g01626 696 FunFam Cyclic nucleotide-gated ion channel 1 465 583 - -
Rops4g01626 696 Gene3D Helix hairpin bin 394 458 - -
Rops4g01626 696 SUPERFAMILY cAMP-binding domain-like 396 584 IPR018490 -
Rops4g01626 696 SMART cnmp_10 467 598 IPR000595 -
Rops4g01626 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 691 - -
Rops4g01626 696 Pfam Ion transport protein 70 395 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops4g01626 696 CDD CAP_ED 467 599 IPR000595 -
Rops4g01626 696 ProSiteProfiles cAMP/cGMP binding motif profile. 467 550 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01626 Rops-Chr4 39634230 39640091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01626 1 693 Ion Channels AT5G53130 61.411 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01626 K05391 - gmx:100795201 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04239 8 84992081 85020585 Rops4g01626 4 39634230 39640091 PCT