Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01624 ATGCGATACATATCACAACCATCAACACCCTCAGACATGAAATCAATTTTACTTCCAAAGTCGGATGAGAATGGAGAACCAATTCAGTGTTCTTATGCTTCCTGGCTAGGAAACCATCCTTCTGCCTTGGACAATTTTGAAGAAATGATGAGCATTGCCAAAGGGAAAGAGATTGTTGTGTTCTTGGACTATGATGGAACACTCTCACCAATTGTAGATGACCCTGATCAGGCCTACATGAGTGATGCTATGCGTGCAGCTGTACGGGAAGTTGCTAATTGTTTTCCCACAGCCATTGTTAGTGGAAGGCGCAGGAGTAAGGTATATGAATTTGTAAAGTTAAGAAATGTCTATTATGCTGGAAGTCATGGCATGGATATATCAACTCCATTAGGCTCATCAAAATATGAAGATCAGAAGCATCAGACAAAAGCTGTTGATGAAATGGGTAATCAAGCTGTTCATTTTCATCCAGCAAAAGAATTCTTGCCAACAATCCAAGAGATAATTGAGGTTTTGAAAGAAAATACTTCAAGAATAAAGGGCTCTATGATTGAGGATAACATGTTCTGCATCAGTGTACACTACAGGCGTGTGAAAAATGAAGAGGATGTTGAAGTTCTCAGGGAAATTGTGGAGTCTATCATGAAAGATTACCCCGATTTTCACATATCAAGAGGGAGAAAGGTTATGGAGATACGCCCAAATGTAAAATGGGATAAAGGCCATGCTTTGATGTATTTACTTGACACTCTTGGATTTGACAACTTCAATGATGTTCTACCAATGTACATTGGTGATGACAGAACAGATGAAGATGCTTTTAAGGTTATAAGACAAATTGGACAAGGTTTTCCAATCATTGTTTCCTCAGTTGCTAAGGAGACCAAGGCTTCATATTCTCTTCGTGACCCTGATGATGTAATAACTTTCTTGAAACGTTTAGCAAAATGGAAGAAGAAGCTTGTTACAGAAAACTAA 981 0.3863 MRYISQPSTPSDMKSILLPKSDENGEPIQCSYASWLGNHPSALDNFEEMMSIAKGKEIVVFLDYDGTLSPIVDDPDQAYMSDAMRAAVREVANCFPTAIVSGRRRSKVYEFVKLRNVYYAGSHGMDISTPLGSSKYEDQKHQTKAVDEMGNQAVHFHPAKEFLPTIQEIIEVLKENTSRIKGSMIEDNMFCISVHYRRVKNEEDVEVLREIVESIMKDYPDFHISRGRKVMEIRPNVKWDKGHALMYLLDTLGFDNFNDVLPMYIGDDRTDEDAFKVIRQIGQGFPIIVSSVAKETKASYSLRDPDDVITFLKRLAKWKKKLVTEN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01624 326 FunFam Trehalose 6-phosphate phosphatase 165 325 - -
Rops4g01624 326 Gene3D - 60 302 IPR023214 -
Rops4g01624 326 Pfam Trehalose-phosphatase 61 305 IPR003337 GO:0003824|GO:0005992
Rops4g01624 326 NCBIfam HAD-IIB family hydrolase 60 280 IPR006379 -
Rops4g01624 326 FunFam - 58 110 - -
Rops4g01624 326 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 26 321 IPR044651 GO:0004805|GO:0005992
Rops4g01624 326 CDD HAD_TPP 59 308 - -
Rops4g01624 326 SUPERFAMILY HAD-like 59 320 IPR036412 -
Rops4g01624 326 Gene3D - 140 236 - -
Rops4g01624 326 FunFam Trehalose 6-phosphate phosphatase 159 236 - -
Rops4g01624 326 NCBIfam trehalose-phosphatase 56 317 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01624 Rops-Chr4 39560747 39563122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01624 60 316 Trehalose Biosynthesis Gene Families AT1G60140 26.568 3.41e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01624 K01087 - gmx:100799466 494.967