Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01623 ATGAGCGGAAAGAAATCAGAGAAGAAAAAGAAAAAGAACGAGAGCGATGACGAAGACGACGACGTTTTCTACTACCGCTATTGCGCTTCATCGTCAATCTCCTCTAACAACCCACAACAACCCAAACAGAATAACAGTAACGGCGAATCGTTAGCTCCGTCAAAATCAACTGTCTACGTTTCGAACATCGACTATTCCCTAACTAACTCCGATCTCCACACGCTTTTCTCAACCTTCGGCAAGATCGCACGTGTGACCGTCCTCAAGGACCGTGTCACGCGCCTCAGCCGCGGCGTCGCTTTCATCCAGTTCGTTTCCCGCCACGACGCCCGCCGCGCCGCGTCGGAGATGCACCGGAAGGTCCTCAACGGTCGAACTCTAACAGCTTCCATCGCCGCCGATAACGGCCGCGCACCTGAGTTTATCCGGAAGCGTGTTTACACCGACACCGGCCGGTGTTTCGAGTGCGGTGCCTCCGGCCACCTCTCGTATGAATGTCCGAGGAATCAGTTGGGTTCCCGGCCGCGTCCGCCGCCCGGTCGTGTCCGACGAGATTTCCGGAGGCCGAGGGAGGAGCATGAGGAGGATGATGGTGGTGAAATTGGTGGCACGGAGGCGTTTCAGGATGATAATTGGGCTTCTGTTGTGGATGATGGAGCGGATGAGAGGCTGTTAGGGAGGAATGAAAACGACGACGTTGTGGCCAAGAAGAAGGCGAAGAAAGCTGGGTACTTTAGTGATGAGAGTGGTGATGATGAAGATGATGATTAA 771 0.5422 MSGKKSEKKKKKNESDDEDDDVFYYRYCASSSISSNNPQQPKQNNSNGESLAPSKSTVYVSNIDYSLTNSDLHTLFSTFGKIARVTVLKDRVTRLSRGVAFIQFVSRHDARRAASEMHRKVLNGRTLTASIAADNGRAPEFIRKRVYTDTGRCFECGASGHLSYECPRNQLGSRPRPPPGRVRRDFRRPREEHEEDDGGEIGGTEAFQDDNWASVVDDGADERLLGRNENDDVVAKKKAKKAGYFSDESGDDEDDD* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01623 256 Gene3D - 1 140 IPR012677 -
Rops4g01623 256 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Rops4g01623 256 MobiDBLite consensus disorder prediction 178 197 - -
Rops4g01623 256 SUPERFAMILY Retrovirus zinc finger-like domains 137 168 IPR036875 GO:0003676|GO:0008270
Rops4g01623 256 Pfam Zinc knuckle 152 167 IPR001878 GO:0003676|GO:0008270
Rops4g01623 256 SMART rrm2_1 57 130 IPR003954 GO:0003676
Rops4g01623 256 MobiDBLite consensus disorder prediction 31 53 - -
Rops4g01623 256 SMART rrm1_1 57 130 IPR000504 GO:0003723
Rops4g01623 256 MobiDBLite consensus disorder prediction 216 247 - -
Rops4g01623 256 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 14 252 IPR044598 GO:0000398|GO:0005689
Rops4g01623 256 ProSiteProfiles Zinc finger CCHC-type profile. 152 168 IPR001878 GO:0003676|GO:0008270
Rops4g01623 256 SUPERFAMILY RNA-binding domain, RBD 45 142 IPR035979 GO:0003676
Rops4g01623 256 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 7 140 - -
Rops4g01623 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 134 IPR000504 GO:0003723
Rops4g01623 256 MobiDBLite consensus disorder prediction 168 256 - -
Rops4g01623 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 127 IPR000504 GO:0003723
Rops4g01623 256 Gene3D - 143 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01623 Rops-Chr4 39546248 39547781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01623 55 118 Eukaryotic Initiation Factors Gene Family AT3G11400 40.625 8.84e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01623 K13154 - gmx:100814914 277.33