Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01622 ATGACCACAAATCTCTTATCACAACTTCGTCTCCTTCATCTCCAACCCATGAAGCTTCACACTCTCCCCCTTTTCTCTCGAACCTTCTTCAAGTTCTCCCACCTTCCCCTCCGAAACGCATCGTTTCGCAGCAGCCCCTTCTCAACCCGCAGGTCCCACGTGGATAACAGGCAAAAGATCCAGGCTTCCAAGACTCTCGTTGACGATGAGGCCGAGCTCAGTGACTGGGTCGATGGGCTTCGGACGGGCCGGGCCGACAAGTTATCCGAGCCCACGAGGTTCAATGATGAAGAAGGTGAATCCCGGTCAAGGGGGAATAACAGGGCTTCTACGTTGGGAAAGAAGAGAAGGGGTGAGGATTTGAGAAGAGGAAGAAACAATGGCAATGCTAGGAGAAAGTTTCAATCGAGTAGTGATGATGATAATCATGATGATGTAGTAGGAAGAAGGTTTAAGGGTGGTGGTGGCACAGTTGGTGAATTTCTTAGTGAAGAAGACGATGAAGAAGAGAGTGGGGATGAGGAGATATTGAATAAGAGTAGAAGTGCTTTGTTTGGTGAACAAAATGGGTTGAATAGGAAGAGTACTGAACAAGCTCCTAGACCTTCTTCACCTTCGGGATCTGATTCTTACTTAAGTGAAACCAGATTTGACCAATGTTCAATCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACTCTTCCAGGAATTCTCAAAGGTAAGGATGTCCTTGCAAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAAGTCACCTCCAAGTGATCGTGATCATAGGCGGCCACCAATTCTTGTTCTTGTCATATGCCCGACTCGAGAGCTTGCTTGTCAAGCTTCTGCAGAAGCCACTAAACTGCTTAAGTACCATCCTACCATCGGTGTTCAAGTTGTGATTGGAGGAACAAGACTTGCTTTAGAACAGAAACGCATGCAAGCAAATCTTTGCCAGATCCTTGTAGCTACTCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTGCAACTAGGCTTATGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCTGCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCCACCATTCCAGATGAGGTGCGCCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAAGTTGTCAATACAGTTCAAGAGGGTACCGAGGAGACACATGCACAAGTCCGCCAGATGCATTTAGTTGCCCCATTAGACAAGCACTTCTCTGTACTCTATGTTCTTCTGAAGGAGCACATTGCAGACGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGAACTTCTTGCTGAGTTGAAGGGTCCCATCCTGGTTACATCAGATGTATCTGCACGTGGAGTTGACTATCCAGATGTCACTCTTGTTGTGCAGGTTGGTTTACCAGCTGATAGAGAACAGTATATACATCGACTGGGTAGAACGGGGAGAAGAGGAAAAGAAGGGCAAGGCATACTGCTACTGGCTCCTTGGGAGGAGTTCTTTCTATCTACCACAAAAGATTTGCCTATTGAGAAAGCTCCAGTACCTTCAGTTGATCCTGACACTAAGAAAAAGGTGGAAAAGGCTCTATCCCAAATGGATATGAAGAATAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCCAACAAGAAAGTGGGGAGAGACAAGTACAGGCTAGTGGAGCTTGCAAATGAGTTCAGTAGAAGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAGCTAGTCCTTGGCAAAATGGGCCTTAGAAATATCCCTGGTTTACGTTCCAAATAG 1974 0.4519 MTTNLLSQLRLLHLQPMKLHTLPLFSRTFFKFSHLPLRNASFRSSPFSTRRSHVDNRQKIQASKTLVDDEAELSDWVDGLRTGRADKLSEPTRFNDEEGESRSRGNNRASTLGKKRRGEDLRRGRNNGNARRKFQSSSDDDNHDDVVGRRFKGGGGTVGEFLSEEDDEEESGDEEILNKSRSALFGEQNGLNRKSTEQAPRPSSPSGSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPGILKGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPSDRDHRRPPILVLVICPTRELACQASAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANLCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATIPDEVRQVCHIALRRDHEVVNTVQEGTEETHAQVRQMHLVAPLDKHFSVLYVLLKEHIADDVDYKVLVFCTTAMVTRLVAELLAELKGPILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTTKDLPIEKAPVPSVDPDTKKKVEKALSQMDMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01622 657 Gene3D - 175 430 IPR027417 -
Rops4g01622 657 SMART ultradead3 234 447 IPR014001 -
Rops4g01622 657 MobiDBLite consensus disorder prediction 134 150 - -
Rops4g01622 657 MobiDBLite consensus disorder prediction 182 213 - -
Rops4g01622 657 MobiDBLite consensus disorder prediction 87 213 - -
Rops4g01622 657 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 215 243 IPR014014 GO:0003724
Rops4g01622 657 Gene3D - 495 635 IPR027417 -
Rops4g01622 657 SMART helicmild6 462 542 IPR001650 -
Rops4g01622 657 MobiDBLite consensus disorder prediction 112 127 - -
Rops4g01622 657 Pfam Helicase conserved C-terminal domain 499 542 IPR001650 -
Rops4g01622 657 MobiDBLite consensus disorder prediction 87 104 - -
Rops4g01622 657 CDD SF2_C_DEAD 444 551 - -
Rops4g01622 657 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 588 IPR001650 -
Rops4g01622 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 424 IPR027417 -
Rops4g01622 657 Pfam DEAD/DEAH box helicase 240 417 IPR011545 GO:0003676|GO:0005524
Rops4g01622 657 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 429 IPR014001 -
Rops4g01622 657 CDD DEADc_MSS116 222 431 - -
Rops4g01622 657 PANTHER RNA HELICASE 175 587 - -
Rops4g01622 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 555 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01622 Rops-Chr4 39536554 39542030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01622 215 570 Eukaryotic Initiation Factors Gene Family AT3G19760 26.823 5.00e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01622 - - gmx:100795739 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01622 4 39536554 39542030 Rops4g01622 4 39536554 39542030 ECH