Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01612 ATGGGAGAGAACATGAAGTGTGAACAAGTTGGTCTCATAGATGAGCTAATGCAAGGGAAGGAGCTAGCAAAGCAGCTTTGTGACCATTTGGTCTCTCCATCATCATCCCATGTAACAAATGAATTCTTGATTGAGAAAATACTTTCATCTTATGAGAAAGCACTTACCATGTTGAACTGGAGGGCCAATGTGGGGGAAATTAAGACCAACGATGGCAACATGATGGATTCCCCTTGTTCTTTTACAAATGGGAGCCCAAAAAGTGAGGTTTTGGACCCAGAGTTTAAGCACAGAGATGTCTTCAAGAAAAGAAAGACCATGCCGAGATGGACAAAGCAAGTGAAGGTGTGTTCTGGAACAACACTCGAATCTCTGGAGGATGGTTATAGTTGGAGAAAATATGGGCAGAAGGATATTCTTGGAGCTAAGTTTCCAAGGGGATATTACAGATGTACACATAGAAATGCACAAGGGTGTCTAGCTACTAAGCAAGTGCAAAAGTCAGATAAAGACCCAACGGTATTTGAGATAACCTATAGAGGAAGACACACATGCACTCAAGCTAGTCATTTAAACAAGGCATTCCCATCAAAAACAAAGATAGGCTTGGGAGAAGATAAACAACACCACAACCATCAAAAGAATCAACCACAAGAAGAGAAAATAGAACAACCCCAAGACACAATTTTCTCTTTTGGATCAAATCTTGAGGTTAAAATAGAGGACTTGGACAACAAGGAGGACATATTCCCATCATTTTCCTTTTCTTCTTCATCAATAGGATCTGAAAATGAGGACAACATATTCTCTGAGACCATGATTGGAAACAATTTCATGGAAAGCTTCTCTCCTACATTCATATCACCAGAGACTTCAGAATCAAACATTTTCCATTTGTCACCATGTCACTTGGGCAGTAATGGACTAGGCCTAAGTGTGCAAACCCCAGAGTCTGATATCACTGAGATAGTTTCAGCCCCAACTTCAGTCACAAATTCTCCAATGATAGATTTGGATCTTATCTTTGACAAGTTGGATTTTGACATATATTTCCCTATCAACACCCCAGAACTATGCACTTGA 1083 0.4007 MGENMKCEQVGLIDELMQGKELAKQLCDHLVSPSSSHVTNEFLIEKILSSYEKALTMLNWRANVGEIKTNDGNMMDSPCSFTNGSPKSEVLDPEFKHRDVFKKRKTMPRWTKQVKVCSGTTLESLEDGYSWRKYGQKDILGAKFPRGYYRCTHRNAQGCLATKQVQKSDKDPTVFEITYRGRHTCTQASHLNKAFPSKTKIGLGEDKQHHNHQKNQPQEEKIEQPQDTIFSFGSNLEVKIEDLDNKEDIFPSFSFSSSSIGSENEDNIFSETMIGNNFMESFSPTFISPETSESNIFHLSPCHLGSNGLGLSVQTPESDITEIVSAPTSVTNSPMIDLDLIFDKLDFDIYFPINTPELCT* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01612 360 MobiDBLite consensus disorder prediction 201 225 - -
Rops4g01612 360 SUPERFAMILY WRKY DNA-binding domain 121 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops4g01612 360 ProSiteProfiles WRKY domain profile. 120 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01612 360 SMART WRKY_cls 125 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01612 360 MobiDBLite consensus disorder prediction 201 221 - -
Rops4g01612 360 Pfam WRKY DNA -binding domain 126 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01612 360 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 284 IPR044810 GO:0003700
Rops4g01612 360 FunFam WRKY transcription factor 53 112 188 - -
Rops4g01612 360 Gene3D WRKY domain 109 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01612 Rops-Chr4 39429490 39432104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01612 5 250 WRKY Transcription Factor Family AT4G23810 38.129 5.41e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops4g01612 WRKY 1.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01612 - - aprc:113849885 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01612 4 39429490 39432104 Rops4g01612 4 39429490 39432104 ECH
Rops1g02249 1 44442874 44444384 Rops4g01612 4 39429490 39432104 ECH
Rops8g04229 8 84866946 84869286 Rops4g01612 4 39429490 39432104 PCT