Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01577 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATCGCAAGAGAGGAAAGAACGAAGCCGATGATGAAAAGCGAGAACTCGTCTTCAAAGAAGATGGTCAAGAATACGCTCAGGTTCTTCGCATGCTCGGTAACGGTCGTTGTGAAGCCATGTGCATCGACGGAACCAAACGTCTCTGTCACATCCGTGGTAAGATGCACAAGAAGGTTTGGATCGCCGCCGGTGACATCATCCTCGTCGGACTCCGTGATTACCAGGATGACAAGGCTGACGTCATCCTCAAGTACATGCCGGATGAGGCGAGGCTGTTGAAGGCGTATGGTGAGCTTCCGGAGAGTACTCGACTCAACGAGGGGATTGGTGGTGGCTTGGATGAGGAGGATGATGCTACTGCTAATGATTATATTGAGTTTGAGGATGAGGATATTGATAAGATTTAA 438 0.4932 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIGGGLDEEDDATANDYIEFEDEDIDKI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01577 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Rops4g01577 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Rops4g01577 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Rops4g01577 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Rops4g01577 145 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Rops4g01577 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Rops4g01577 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Rops4g01577 145 Gene3D - 2 145 IPR012340 -
Rops4g01577 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Rops4g01577 145 FunFam Eukaryotic translation initiation factor 1A 2 145 - -
Rops4g01577 145 MobiDBLite consensus disorder prediction 1 25 - -
Rops4g01577 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01577 Rops-Chr4 39019147 39019815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01577 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 89.655 1.57e-90 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01577 K03236 - gmx:100780794 249.595