Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01557 ATGTCCACTTCCAATCCTTTCTCTCCACCTCCAACCCCTTACCTCACCAACCTCGGCTTCGGTTATTCCATTGCCATCGCCCTTGGCTTCCTCTTCCTCCTCTCCACTTTAATCCTCTCCTCTTATCTCTGTTGCCGCACTTTCCGTAACCGTCATAACCACCCCAACGACCCGGACGGCGTCGTTTTGCCGCGGATAATCTTCGTGGCGGAAGATGATGACGATAGGGAGCGTGACGGCGTCGTATTGGGTCTTGACCAGAGTGTTATAAACTCGTACCCGAAGTTTCAGTATGATAGGGATGCGGGACATGATAGCACGTGCTCGATCTGTTTGTGTGAGTATAAGCATTCGGAGATGCTGAGGATGATGCCGGAGTGTCGTCATTACTTTCACCTTTGTTGTCTCGATTCGTGGTTGAAGCTTAACGGTTCTTGTCCTGTTTGTCGGAACTCGCCGATGCCGACGCCGCTATCAACGCCGTTGCAGGAAGTGGTGCCTCTTTCTCACTATGCAGCTGATAGAAGGGGAAGGAGGTGA 540 0.5185 MSTSNPFSPPPTPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRHNHPNDPDGVVLPRIIFVAEDDDDRERDGVVLGLDQSVINSYPKFQYDRDAGHDSTCSICLCEYKHSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYAADRRGRR* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01557 179 SMART ring_2 108 149 IPR001841 -
Rops4g01557 179 PANTHER RING-H2 FINGER PROTEIN ATL67 10 177 IPR044289 GO:0016567|GO:0016740
Rops4g01557 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 155 IPR013083 -
Rops4g01557 179 SUPERFAMILY RING/U-box 93 155 - -
Rops4g01557 179 Pfam Ring finger domain 107 150 IPR001841 -
Rops4g01557 179 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01557 Rops-Chr4 38669729 38670502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01557 5 169 C3H Transcription Factor Family AT5G07040 40.237 1.14e-34 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01557 - - vra:106773185 283.878