Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01556 ATGGTGGTGGGCTTCCTGGCCCGTGACGATGAAGATGCCTCTATCTCCACCGTCACCACCTCTATCATCCACACATACGACATCGTTTTCCACGGTTTCTATGCAAAGCTCTCACCTTTAGAGGCACAGAAGCTTCAAAAACTCTCCCACGTCATCACCCTCATACCAGAACAACTTCACATATGCTGCAACGTTCTCGATTTCTCCGACACGTTGAAGAACATTAGGGAGAAAGAGATCAAGCGTCAAGCGTTGATGGAGCTTGTGGAGTTCATCCAATCGGGTTCCGGCAAGATATCGGAGAATTTCCGGGAAGAGATGATCACAATGATCTCCATCAACATTTTCCGGTGCTTGCCGCCGGCGTCTCACGAGAACATCGGTGAGGGAGAGCGCGATGGAAGGTGGAGGGCAACATAG 420 0.5048 MVVGFLARDDEDASISTVTTSIIHTYDIVFHGFYAKLSPLEAQKLQKLSHVITLIPEQLHICCNVLDFSDTLKNIREKEIKRQALMELVEFIQSGSGKISENFREEMITMISINIFRCLPPASHENIGEGERDGRWRAT* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01556 139 Gene3D - 30 135 IPR011989 -
Rops4g01556 139 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 52 127 IPR002554 GO:0000159|GO:0007165|GO:0019888
Rops4g01556 139 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 36 125 IPR002554 GO:0000159|GO:0007165|GO:0019888
Rops4g01556 139 Pfam Peptidase inhibitor I9 18 58 IPR010259 -
Rops4g01556 139 SUPERFAMILY ARM repeat 55 123 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01556 Rops-Chr4 38661863 38662361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01556 21 59 Subtilisin-like Serine Gene Family AT3G14240 58.974 1.77e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01556 K11584 - gmx:100814538 129.798