Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01553 ATGACTGGTCCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTAAGAGGCTGTGTTTTTGCACCTTACTTTTGTCATGATCAATTATATACCCATTTTCCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAATCTCCTTGCACATCTCCCTGTGAGTGATCGTTATGAAGCTGCACTTACTATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGTTTATCTCAGGGAACAAGCAGCTCAGAGATGTTTTAATGCCTCAGCTGCTGAAAACCCTAATGAGAATATAATGGGTCCTCAATTTTTTTCACCAAACTTGATCACTAATCCCTCAACATTACAATATTATGGGAATATTACTCCCATGGACCCAAACCCTGTTGGAAATTATGAAAATTCAGGAACCATGGAAGAGAGCATCTCATTTTCTAGATTTGAAGAGAGTTGTGACATGCAAAGGCAGTGGTCCTTTCATGAAGTGTATAACCTTCAGTAA 582 0.4038 MTGPGSPCGACKFLRRKCVRGCVFAPYFCHDQLYTHFPAIHKVFGASNVSNLLAHLPVSDRYEAALTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLVYLREQAAQRCFNASAAENPNENIMGPQFFSPNLITNPSTLQYYGNITPMDPNPVGNYENSGTMEESISFSRFEESCDMQRQWSFHEVYNLQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01553 193 Coils Coil 87 107 - -
Rops4g01553 193 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 122 - -
Rops4g01553 193 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Rops4g01553 193 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01553 Rops-Chr4 38640559 38641244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01553 7 122 AS2 family AT3G58190 76.271 2.45e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops4g01553 LOB 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01553 K13945 K13944 gmx:100816960 277.715