Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01545 ATGGAGCAAGATTGGGATCTCTATGCTGTGGTAAGAGGCTGCACCACCGTTACTTCCTCCTCTTCCACCACCACAACAAGTACTACTGCTTCATCTGTATCTTCCTCTGGTTTTGGGACTTGTTACCAACCTTCAGCTTCATGCAGCTTCTTCTCTATTTTCCCTGCTGAAAAAGCAGGTCAAGTTTTGTCCCTTTCAAACCCTTTAGAAACAAAGGGTTCCATTGAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTTCACAAATCAAAGGTTCCATCTTTTCAAACATCTTCTCCACTCTCTTCCTTGTCTTATTCATCTGCACCCAAATCACCTAAGACACGGCAAAAACAAAAGCAGCCTCACCATGCTGGTTCTGCCACCACCCCAAGATCTAAAAGAAGGAAGAATCAGCTTAAGAAGGTTTGTCAAGTGCAAGCTGAGAATCTGTCTTCAGATATATGGGCATGGAGGAAATATGGTCAGAAACCCATTAAAGGGTCACCATATCCAAGGGGATACTACAGATGTAGCAGCTCAAAAGGGTGCTTAGCTAGAAAACAAGTGGAAAGGAATAAATCAGACCCAACAATGTTCATAGTCACATACACAGGGGAACATAGCCACCCTGCTCCAATTCATAGAAATTCCCTTGCTGGCTCCACACGCCAGAAGCCAGTAACACCTCAAACCGCCACTGCCGGAGGAGACTCAGGCAAATCACCGGCGAAACCCGTTTCTCCGGCGACCTCAGGGGCAGAGGAAGAAGAGGTTGCAGCACCCCTGAGTGCAAAGTCAGAGGATATGGAAGATTTGATGAATGATGATGAGGAAGAGATTGAATTTGGGTTATCAGATATGGTTGTAACAGATGATTTCTTTGAAGGCTTAGATGAACTGACAGGGTCTGTAAAAGCAACTAATGAAGACTGTTTTCCTGACCCTTTTGCAGCTAGTATTGCTCTCCCTTCTTGGGTGGCCAATAATGCTGCCACTGCAGCTGGTGGTAGCTGA 1014 0.4556 MEQDWDLYAVVRGCTTVTSSSSTTTTSTTASSVSSSGFGTCYQPSASCSFFSIFPAEKAGQVLSLSNPLETKGSIEELHELCKPFFHKSKVPSFQTSSPLSSLSYSSAPKSPKTRQKQKQPHHAGSATTPRSKRRKNQLKKVCQVQAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFIVTYTGEHSHPAPIHRNSLAGSTRQKPVTPQTATAGGDSGKSPAKPVSPATSGAEEEEVAAPLSAKSEDMEDLMNDDEEEIEFGLSDMVVTDDFFEGLDELTGSVKATNEDCFPDPFAASIALPSWVANNAATAAGGS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01545 337 FunFam WRKY transcription factor 22 135 205 - -
Rops4g01545 337 SMART WRKY_cls 151 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01545 337 MobiDBLite consensus disorder prediction 217 277 - -
Rops4g01545 337 Pfam WRKY DNA -binding domain 153 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01545 337 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 302 IPR044810 GO:0003700
Rops4g01545 337 ProSiteProfiles WRKY domain profile. 146 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01545 337 SUPERFAMILY WRKY DNA-binding domain 147 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops4g01545 337 Gene3D WRKY domain 135 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops4g01545 337 MobiDBLite consensus disorder prediction 94 141 - -
Rops4g01545 337 MobiDBLite consensus disorder prediction 94 114 - -
Rops4g01545 337 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01545 Rops-Chr4 38553180 38554666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01545 1 336 WRKY Transcription Factor Family AT4G01250 46.875 3.67e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops4g01545 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01545 K13425 - gmx:100798084 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01545 4 38553180 38554666 Rops5g01056 5 21546642 21548379 ECH
Rops4g01545 4 38553180 38554666 Rops6g02676 6 48144927 48146228 ECH
Rops4g01545 4 38553180 38554666 Rops4g01545 4 38553180 38554666 ECH
Rops4g01545 4 38553180 38554666 Rops8g01021 8 21503416 21505023 ECH
Rops4g02108 4 47511521 47516886 Rops4g01545 4 38553180 38554666 ECH
Rops8g01021 8 21503416 21505023 Rops4g01545 4 38553180 38554666 PCT