Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01544 ATGGTTGACGGCGGCGACTTCGCCGGCACCATTTGTTCGATCTGCTATGAAGTTCTCAAGCCAATTTCCGAAGACCTTCAATCCATCTCCATTTGCGGCCATGTCTTCCACGAGCTATGTCTCCAGCAATGGTTCGAGTACTGTGTGAAATCGAAGAAGCACACTTGCCCCGTTTGCAAGCAAGGTTGCAAGGCCAGTGACGCTTGCAGGCTTTTTTTTCAGTCTGTTGGAGATGTTAGTGACGTTGTTCCACCTAAGAAGCTCATTGATTTTGAGGAAGATGCTGGTGTTTTGCGAAGGGAAGTGAAGAGATTAGAGGTGAAAGCTTCAGGGCTTAGTTCGGTGTTGGAACGGCAAACAAAGGAGTTAGAAGAACTTAAAGAGGAGCTTTGTGCTTGTAAGGAGCAGGCAAAGATAGAAATAGCATTAAAGAATGAGGCCTTGAAACAAAAAGCATCCATACAATTCCAGCTTAATATGAAATCAGAGGAGCTTGAGAAGTCAACTTTGGAGTGTTTTAGATTAAAGGATAGAAATATGGCTTTGGCTAAAGAATTTGCAGCATTAAAATTAGTGTCTGACGTGGACCTTGATGAAGAGGAGGTTTTGACGCTTGCCACTTTGGGTAATGGGGCCAACAGTCAAGACACAATAGACACATTAAAAAGATCTCTTGTCATGCGGAACAGGAGTTACAAAGATTTAATGACCAAGTGCAATATTCTGGGAAGAGGTGAAGCTCGATATAGTAAAAAGCTTGAGAAGGCTAAAGAGAAGATCATTAAATTGAAGGCAAGGGTACAAGAACTGGAAACAACAGCTGAAGCAAAAGAGAGAGAATATTTGAAGTCTCTGAAAGTTTTAAAGAAAACCAAGTGTTCAAAGAATCTTGAAAATAGCATAAGTTCCAATTCTGATGTATTGACAGCTAGCAAATTTTCTTTAGAAGAGCAAAATAAACAAATTTCGACCCCCAAATCAGGAATTAATCTGAGAGCGAACAAAGATAGTGAAAATTTACAATCTTCGAAGATAGAGAACTCCAATGTTACAAAAGATAAGGCTTTGAATATTAGTAATGGAAGTAAAACTACCTTGTCTCTTGATAAAGATAGAGATTGTATTCTCATTGATGATGATGCCACTGAATTGACTAAAGCTTTACCTGGACAACCAAAACACAATCACAAAGATCAAGACAAGGATGATGTTGCTTTTAGCAAGCCATCTCTAGTGAAATCAGAAGCAGCATCTGGCATAAACACTGAAACATCATTGCAAGGAAAATGCAATTTGGATGAGTCTGCAAGAGTTGATATTTACATTGAAAGGGACAACATTTCTGCTGGTGCTATGGATAAAGATGTGACATTACAAGCCAACGTTACACAAGCTCAACCCATGGTTAACATTAGAAAGGAGTCACCATTAACACATTCAAATTCAGGGGACATTTGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAGCGTGGACAAAATGGTGAATCAACATCTACAAAAGGATCAAGTAATGGTAATTTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAGTAAAAGTTCTAAGGACACCAAGCCAAAGCTTCTCGGATGGTAAGGAAAATTCCGGAAGTTCAAAAAGGTTGAAGTTTGGACCTAAAACAAATAGTTTGCAATCCCGGGGGTGCCTGCAGATAGAACACTTCTTTGGGAGGGTCAGTCAGTAA 1758 0.4022 MVDGGDFAGTICSICYEVLKPISEDLQSISICGHVFHELCLQQWFEYCVKSKKHTCPVCKQGCKASDACRLFFQSVGDVSDVVPPKKLIDFEEDAGVLRREVKRLEVKASGLSSVLERQTKELEELKEELCACKEQAKIEIALKNEALKQKASIQFQLNMKSEELEKSTLECFRLKDRNMALAKEFAALKLVSDVDLDEEEVLTLATLGNGANSQDTIDTLKRSLVMRNRSYKDLMTKCNILGRGEARYSKKLEKAKEKIIKLKARVQELETTAEAKEREYLKSLKVLKKTKCSKNLENSISSNSDVLTASKFSLEEQNKQISTPKSGINLRANKDSENLQSSKIENSNVTKDKALNISNGSKTTLSLDKDRDCILIDDDATELTKALPGQPKHNHKDQDKDDVAFSKPSLVKSEAASGINTETSLQGKCNLDESARVDIYIERDNISAGAMDKDVTLQANVTQAQPMVNIRKESPLTHSNSGDICFSGGLLGPDGTHRYLGKWCKRGQNGESTSTKGSSNGNLIAVGADGRGGRVKVLRTPSQSFSDGKENSGSSKRLKFGPKTNSLQSRGCLQIEHFFGRVSQ* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01544 585 MobiDBLite consensus disorder prediction 541 565 - -
Rops4g01544 585 Pfam Ring finger domain 11 60 IPR001841 -
Rops4g01544 585 MobiDBLite consensus disorder prediction 508 529 - -
Rops4g01544 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 180 IPR013083 -
Rops4g01544 585 Coils Coil 246 280 - -
Rops4g01544 585 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 583 - -
Rops4g01544 585 SMART ringv_2 11 60 IPR011016 GO:0008270
Rops4g01544 585 Coils Coil 88 136 - -
Rops4g01544 585 MobiDBLite consensus disorder prediction 508 523 - -
Rops4g01544 585 SUPERFAMILY RING/U-box 11 64 - -
Rops4g01544 585 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Rops4g01544 585 CDD RING-H2 12 60 - -
Rops4g01544 585 SMART ring_2 12 59 IPR001841 -
Rops4g01544 585 MobiDBLite consensus disorder prediction 319 348 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01544 439 585 C3H Transcription Factor Family AT4G01270 39.869 1.71e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01544 K11985 - gmx:100812811 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01544 4 38533797 38538978 Rops4g01544 4 38533797 38538978 ECH