Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01539 ATGGTGTCTGTGAACCCTAACCCAGCTCAAGGCTTTTACTTCTTCGATCCTTCAAATATGGCTCTTCCCGGTGCCAATCCTTTTCAGCCTCCTCCTCCGCCTCAGCCACCGGCTCCTCCCGCCACTGCTGCGGCGTCAACCGCGGTGGAGGATCTGAATAAGAAGATCCGAAAACCATATACGATTACCAAGTCCAGGGAGAGCTGGACTGAACAGGAACACGACAAGTTTCTAGAAGCTCTCCAATTATTCGATCGTGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAATATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCCAAAACTGCTCCTACTGTATCCCAAGTCACAGGGCCTCTGCAATCTTCATCTGCTTTTGTTGATCCTGCATACATTTATAGCCCAGATTCATCATCTGTGCTTGGAACACCAGTTACTAGTGTGCCTTTATCATCTTGGAATTATAGTGCTATACCTCCAGCCAGTGTGCCACAAGTGACCAGAGATGACATCGGATTGACTGGAGCTGGACAAGCTGTTCCACATAATTGTTGCTATAGCAGCAGTAATGAGAGCACCCATTCGGCTTGGCAAAATAGCAAAGGGATTAATCAAGGTGACCAGGGCAAGCCAATTAAAGTAATGCCAGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTTGATCCAAATTCAACTAATCACCTACAGAAACTAAAACAGATGGACCCAATAAATGTGGAAACGGTATTGTTATTGATGAGAAACCTCACCATCAATTTAATGAGTCCTGAATTTGAGGATCATAAGAGGCTGCTTTCATCATATGATGCTGATTCCGAGAAGGCAAAGTCTGTTAACCTCTGCAGCAAATCCTTCACTGATAAATCTGGGAGTGCTGTTCTGTCTGCATAG 1020 0.4441 MVSVNPNPAQGFYFFDPSNMALPGANPFQPPPPPQPPAPPATAAASTAVEDLNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKTAPTVSQVTGPLQSSSAFVDPAYIYSPDSSSVLGTPVTSVPLSSWNYSAIPPASVPQVTRDDIGLTGAGQAVPHNCCYSSSNESTHSAWQNSKGINQGDQGKPIKVMPDFAQVYSFIGSVFDPNSTNHLQKLKQMDPINVETVLLLMRNLTINLMSPEFEDHKRLLSSYDADSEKAKSVNLCSKSFTDKSGSAVLSA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01539 339 MobiDBLite consensus disorder prediction 116 151 - -
Rops4g01539 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 64 113 IPR006447 GO:0003677
Rops4g01539 339 SUPERFAMILY Homeodomain-like 60 116 IPR009057 -
Rops4g01539 339 ProSiteProfiles SANT domain profile. 64 117 IPR017884 -
Rops4g01539 339 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops4g01539 339 CDD SANT 68 111 IPR001005 -
Rops4g01539 339 PANTHER SWI/SNF COMPLEX-RELATED 42 297 - -
Rops4g01539 339 MobiDBLite consensus disorder prediction 23 54 - -
Rops4g01539 339 MobiDBLite consensus disorder prediction 24 41 - -
Rops4g01539 339 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Rops4g01539 339 FunFam protein REVEILLE 6 isoform X1 68 116 - -
Rops4g01539 339 Gene3D - 69 116 - -
Rops4g01539 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Rops4g01539 339 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01539 Rops-Chr4 38400162 38410574 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops4g01539 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01539 - - gmx:778090 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01539 4 38400162 38410574 Rops4g01539 4 38400162 38410574 ECH
Rops4g01539 4 38400162 38410574 Rops8g01034 8 21956557 21961241 ECH
Rops8g01034 8 21956557 21961241 Rops4g01539 4 38400162 38410574 PCT