Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01538 ATGTCAGTCTACGACGCAGCTTTCGTGGACACAGAGCTCTCAAAACGAACCTCAATCTTCGGTCTCCGTCTCTGGGTCATCATCGGAATACTCGTCGGTTCCCTCATCGTCATCACCCTCTTCCTCCTCTCTCTCTGCCTCACCTCTCGCCGCCGCAACAACAACAAAACCACCAAAAAACTCCGCCACCCCTACTCCGCCGCCACCCCTGTCGTCTCCAAGGAAATCCAGGAGATCGTCCACGTGGCACCATTGCCTGAGATCCACGTCGACACCGTGAAGCTCGAGCTCCACCGTGCCTCCGTTAGCGGTGCCAGCATCTGTGAAACGACATCGTCTTTGGGGAGTGCGAGTGGGAGCGTGGGCCCTGAGGTTTCGCATCTTGGGTGGGGGAGATGGTATACTTTGAGGGAACTGGAAGCTGCTACCAATGGTTTGTGTGAAGAGAATGTGATTGGTGAAGGTGGCTATGGAATTGTTTACAAAGGGTTGCTCCCTGATGGCACCAATGTTGCTGTCAAGAATCTTTTGAATAACAAGGGCCAAGCTGAGAGAGAATTCAAAGTAGAGGTAGAAGTAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCATACAGGATGCTTGTGTATGAATATATTGACAATGGCAATCTGGAACAGTGGCTGCACGGGGAAGTTGGACCTGTAAGCCCGATGACATGGGATATTCGAATGAACATTATATTGGGCACAGCAAAAGGATTGGCTTATCTTCATGAGGGTCTTGAACCAAAAGTTATCCATCGAGACGTGAAATCAAGCAACATACTCCTTGATCGCCAATGGAATCCCAAAGTTTCTGATTTTGGGCTTGCTAAGCTCTTGCATTCAGAGCACAGTTATGTCACCACTCGGGTGATGGGGACATTTGGTTATGTTTCCCCAGAGTATGCCTGCACTGGAATGCTGACTGAGAAGAGTGACGTTTATAGCTTTGGGATACTTATCATGGAAATTATCACTGGGAGAAGTCCTGTTGATTATGCTAGACCTCAAGGAGAGGTTAATTTAATAGAGTGGTTGAAATCTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGCTTCCTGAGAAGCCATCTTCAAAGGCTCTTAAACGTGCTCTTTTGGTTGCTCTTAGATGTGTTGACCCTGATTCATCTAAGAGACCTAAAATGGGACATGTAATCCACATGCTTGAGGCTGATGACCTCTTATTCCGTGATGAACGAAGGTTCGGAGGAGAATCTTCCCATTCTCATCGTGATTATCACAGAGAGAATAGGGACTCAAGTTTAGATAGAAGTCGAATAGGTGGAGAAATCACTGATCAAAGTGAAGATGATAGTAGTAGAAATCACCATCAACCCACTAGGTGGAGAAGATGA 1440 0.4708 MSVYDAAFVDTELSKRTSIFGLRLWVIIGILVGSLIVITLFLLSLCLTSRRRNNNKTTKKLRHPYSAATPVVSKEIQEIVHVAPLPEIHVDTVKLELHRASVSGASICETTSSLGSASGSVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYKGLLPDGTNVAVKNLLNNKGQAEREFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYEYIDNGNLEQWLHGEVGPVSPMTWDIRMNIILGTAKGLAYLHEGLEPKVIHRDVKSSNILLDRQWNPKVSDFGLAKLLHSEHSYVTTRVMGTFGYVSPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYARPQGEVNLIEWLKSMVGNRKSEEVVDPKLPEKPSSKALKRALLVALRCVDPDSSKRPKMGHVIHMLEADDLLFRDERRFGGESSHSHRDYHRENRDSSLDRSRIGGEITDQSEDDSSRNHHQPTRWRR* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01538 479 ProSiteProfiles Protein kinase domain profile. 146 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01538 479 PANTHER OS01G0323000 PROTEIN 8 442 - -
Rops4g01538 479 Pfam Protein kinase domain 149 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01538 479 MobiDBLite consensus disorder prediction 432 472 - -
Rops4g01538 479 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Rops4g01538 479 SMART serkin_6 146 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01538 479 FunFam Probable serine/threonine-protein kinase At1g01540 126 221 - -
Rops4g01538 479 CDD STKc_IRAK 152 418 - -
Rops4g01538 479 SUPERFAMILY Protein kinase-like (PK-like) 124 418 IPR011009 -
Rops4g01538 479 Gene3D Transferase(Phosphotransferase) domain 1 222 428 - -
Rops4g01538 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Rops4g01538 479 Gene3D Phosphorylase Kinase; domain 1 127 221 - -
Rops4g01538 479 MobiDBLite consensus disorder prediction 432 479 - -
Rops4g01538 479 FunFam Putative receptor-like serine/threonine-protein kinase 222 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01538 Rops-Chr4 38388494 38391646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01538 26 418 Trihelix Transcription Factor Family AT5G38560 40.750 5.15e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Rops4g01538 Pkinase 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01538 - - lang:109330952 784.252