Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01526 ATGGCTGCTGTTAGGTTTTCGTCTGTAAGACGTATACATAGTTCAATCAATGGTTCTTTGAACATGGAATTAGTTCAACAATACCATTATCACCATAATGTTGATATGAACCTTGCAAGAATTTCAAGGTTGCCTGATTATTCAATGACCCGTCCTTATTCCAAAGGAGAGTTAAAGTTGCCTCATATTTTTGCTCAGAGTCAGTTTACTAATTTGGCTTCTGAATCACTTGTTAGTAGTAACCTCTTTAGGACCAAAAACAATGTCTCATTTAATCCTAGATTCTCTAGCTTTGGTCTCCGGAGTACTCTTCCTTTTGCTTCCATGACCCACATGTTGAATTGCCGAATGTATTCGTCGTCTTTGGGTGGAAAAGGAAGTAGGATTGGTGACACAGAAGTTGCTGCTGGGTCTGGTGCAAGTGACATGAATGCTGGTGGTGATTCCGTTATTACTGGTGATTGGGCTGAGAGGGTTAAGGATACTTGGAAGAGTGTGGTAGAGACATCATCATATGCTGGGCAAAAGGTTAAGGAAACTTCTGATGATCTTACTCCATATGTTCAACAGTTGCTTGATTCACATCCATACCTTAACAAGGTGGTTATTCCAGTTGGTGGTACATTAACTGCTACTCTAATAGCTTGGTTCTTGATGCCAAAGATTTTGAGGAAATTTCACAAATATGCAATGCAAGGTCCCGTTTCTCTATTTCCAGGAAGTGTGTTTGGGGAGCCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTAGTTACCTTTATAGCATTCTCACAAATTGCTGTAATGGTAGCTCCAACAACGATAACCTCACAGTATCTTGCACCCGCTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACCAATGTTTTTGCACGGACATTGTCCAGTCAAAGTTTGCTTGGACTTGATAGGGAGAAATTGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTATAGGAGGAGTGGCTACTGCATTTGCTGCCAAAGACATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACCACATCATTGCTAAGTTCTGAGAAGTTCCCAGTCATTGTGCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAACAAGTCCCGTGCTGAATATCGTGCCATTATTACCAAAATTCCTCTGCAAATTGAGGATTTAAGTAAAATTCCCCAGATATCAGACGATGTAAAAAGCATGTTAAAATCAAATGCAAAGGTTTTCTTAGGAAAAGATGTTCCCTACTGTTTCTTGTCACGAATAGCAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAACACATGCGCAAAGATGAGTTTTACTCAGCAGAACAAGATATTCTCCTGCAGGCAGTTCAGATCATTAAGAATCATGGGGTTGCTCTTGGCAGCACATGGCAAGACATATCCTAA 1635 0.4049 MAAVRFSSVRRIHSSINGSLNMELVQQYHYHHNVDMNLARISRLPDYSMTRPYSKGELKLPHIFAQSQFTNLASESLVSSNLFRTKNNVSFNPRFSSFGLRSTLPFASMTHMLNCRMYSSSLGGKGSRIGDTEVAAGSGASDMNAGGDSVITGDWAERVKDTWKSVVETSSYAGQKVKETSDDLTPYVQQLLDSHPYLNKVVIPVGGTLTATLIAWFLMPKILRKFHKYAMQGPVSLFPGSVFGEPVPYEKSFWGAMEDPVRYLVTFIAFSQIAVMVAPTTITSQYLAPAWRGAVILSFVWFLHRWKTNVFARTLSSQSLLGLDREKLLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIITKIPLQIEDLSKIPQISDDVKSMLKSNAKVFLGKDVPYCFLSRIASSYAELTLGYNLKHMRKDEFYSAEQDILLQAVQIIKNHGVALGSTWQDIS* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01526 544 Gene3D - 291 390 - -
Rops4g01526 544 Pfam Mechanosensitive ion channel 333 535 IPR006685 GO:0016020|GO:0055085
Rops4g01526 544 Gene3D - 391 439 IPR023408 -
Rops4g01526 544 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 290 374 IPR011014 GO:0016020
Rops4g01526 544 SUPERFAMILY Sm-like ribonucleoproteins 375 440 IPR010920 -
Rops4g01526 544 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 155 539 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01526 155 542 Mechanosensitive Ion Channel Family AT4G00290 66.753 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01526 K22047 - gmx:100789047 863.218