LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops4g01515	ATGGAGGAGTCTGCTATTTTGAGGACTAATTGTTATGAAATAAATTCGCCAAATACCATCAAGGTTGATGATAATAACCATGTTAAGTCCAGTTTGACCGAGCCACATGCAGATGGAAGTGGATCAGTTTGTGGAATGAGACAGGAGATGGAAGATGTTATAGCTGTTAAGCCTCAACTTTTTCAAGTCCCTTCACAGATGCTAATGGATGACCATGTGAATGAAAACACAAATTACTCAGCAGCCCACTTTTTTGGTGTCTATGATGGACATGGGGGCAGCCAGGTTGCCAATTACTGCCGGGAACATCTTCATTCGGTGTTGATTGAGGAGATAGAAGCTCTAGAATCAAGTTTGGCTAAAAAGAATGGGAAAGACAATTGGCAGAACCAATGGAAGAAAGCATTATCCAATTATTTCCATAAAGTAGATGCTGAGGTTGGAGGAGTTAGTGCAGGTAATGATGAAAGGAACAGTGATGATGTTTCTGAGTCAAATATGGAAGAAGCTCTTGCTCCTGAAACTGTTGGCTCTACTGCACTGCACAATTGTTCTGTAATAAGCTTCGATACAAGTTTCAGCACACTCACAAAGCTCTTTCAGATGTGTCATGCTAGGATAACTTCAGAAACTTGGAAAAGCTTGATATCAAACTCAACAATCTCACTTCACTTGAGCTACTTTATTTCGGGTCGAGAGTACATGGATGGAGGGTCCTTAGAGGATCTTCTGAGCAAAGTTCAAACAATTCCTGAGCCATATCTTGCTGCCATTTGTAAGCAGGTATTGAAGGGTTTAATGTATCTTCGCCAAGAAAAACATATTATCCACAGGGACTTGAAACCTTCTAATCTGCTGATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTGAGTGCAATCATGGATCTACACCTGCCAGAGAGAATCAATGGAAGCCAGCAAGGTTACAACTACAAAAGTGATATATGGAGCTTGGGCCTGGTGTTGCTCAAGTGTGCAACAGGGAGATTTCCATATACACCACTAGATCAAAATGAAGAGTGGGAAAATATGTTCCAGCTTATTGAAGCCACTGTTGAAAAACCTCCACCTACTGCTCCATCTGATGAATTTTCTCCTGAATTTTGCTCATTTATCTTAGCATGGTAA	1158	0.4076	MEESAILRTNCYEINSPNTIKVDDNNHVKSSLTEPHADGSGSVCGMRQEMEDVIAVKPQLFQVPSQMLMDDHVNENTNYSAAHFFGVYDGHGGSQVANYCREHLHSVLIEEIEALESSLAKKNGKDNWQNQWKKALSNYFHKVDAEVGGVSAGNDERNSDDVSESNMEEALAPETVGSTALHNCSVISFDTSFSTLTKLFQMCHARITSETWKSLISNSTISLHLSYFISGREYMDGGSLEDLLSKVQTIPEPYLAAICKQVLKGLMYLRQEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMDLHLPERINGSQQGYNYKSDIWSLGLVLLKCATGRFPYTPLDQNEEWENMFQLIEATVEKPPPTAPSDEFSPEFCSFILAW*	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops4g01515	385	SMART	serkin_6	184	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops4g01515	385	Gene3D	-	27	186	IPR036457	-
	Rops4g01515	385	Pfam	Protein phosphatase 2C	43	140	IPR001932	-
	Rops4g01515	385	PANTHER	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED	233	382	-	-
	Rops4g01515	385	SUPERFAMILY	PP2C-like	37	154	IPR036457	-
	Rops4g01515	385	ProSiteProfiles	Protein kinase domain profile.	141	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops4g01515	385	SUPERFAMILY	Protein kinase-like (PK-like)	232	383	IPR011009	-
	Rops4g01515	385	ProSitePatterns	PPM-type phosphatase domain signature.	84	92	IPR000222	GO:0043169
	Rops4g01515	385	Gene3D	Transferase(Phosphotransferase) domain 1	237	385	-	-
	Rops4g01515	385	SMART	PP2C_4	25	290	IPR001932	-
	Rops4g01515	385	Pfam	Protein kinase domain	233	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops4g01515	385	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	275	287	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops4g01515	Rops-Chr4	38113730	38119359	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops4g01515	186	382	MAP Kinase Kinase Gene Family	AT4G26070	51.613	2.04e-65	210

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Rops4g01515		Pkinase	2e-29	CL0016