Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01510 ATGGGTTTTCCGGTGGGTTACGCGGAGGTTTTCTTCCCCAACCTGTTCCTTCACACCTTAGCCTTCCTCGGACTTCTCCGAAACCTCGTATTCATCCTCTTCCACTTCCTCGGACTCTCCGATTTCCTCGAAACCGAGGTTGCCTGGCCGGACCCCACCGGCGGCGTCCGAACCCCCGATTCCGGCAGGACCCCCTCCGTGTCGGCGATGCTGATCCGGGAGCTACTTCCGGTGGCGAAGTTCGGAGACCTCTCCGGCGGCGGCGGCGCCGCCGACGGGGATGGCGGCTGTTCCTGTTGTGCGGTGTGTCTGTTCGAGTTCTCCGAGGAGGAAGAGATCCGGTGCTTGAGGAACTGTAAACACATTTTTCACCGAAGCTGTGTGGACCGTTGGATCGATCATGATCAGAAAACTTGTCCTCTTTGTAGGACCCCCTTTGTACCTGATGATATGCTTGATGATTATAATCAGCGGCTCTGGGCTGCTTCTGGTGTTACTGAGTTTTATGGAGATTACTCTTCTTCCTTCTGA 531 0.5593 MGFPVGYAEVFFPNLFLHTLAFLGLLRNLVFILFHFLGLSDFLETEVAWPDPTGGVRTPDSGRTPSVSAMLIRELLPVAKFGDLSGGGGAADGDGGCSCCAVCLFEFSEEEEIRCLRNCKHIFHRSCVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGVTEFYGDYSSSF* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01510 176 ProSiteProfiles Zinc finger RING-type profile. 100 143 IPR001841 -
Rops4g01510 176 SUPERFAMILY RING/U-box 99 150 - -
Rops4g01510 176 Pfam Ring finger domain 100 143 IPR001841 -
Rops4g01510 176 SMART ring_2 100 142 IPR001841 -
Rops4g01510 176 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 162 - -
Rops4g01510 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 148 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01510 Rops-Chr4 38076514 38077310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01510 1 175 C3H Transcription Factor Family AT1G63840 46.667 2.25e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01510 K16281 - gmx:100790975 278.485