Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01507 ATGACAACACCGTATGACCATCGCCGGAATCCCAGCTCCGGTCACCGGAGCACGCCGGGACGCAGTCCCGGATACGCCTCTTCCGAGCTCAGCACTTCTCAGTACTCAACCAGCTCCTCAGGTGGCCGGAGCCCCATGGTCGCCGCCGTTAGGTCGGTCGCCGGAATGTTTGCCGGTTGCTTCACGCCGCCGGAGACCAATAGCTCCAAGAGCCTGACGGATTCTGAGGAGTTCAAATCTTCGTCTGTTGTTTCGAATGCTTCAAGAGCTGGTAGTCAGAGAGGCCGTGGCTCAAATCGAGGTATCAGCATCAGTTCATACAACTCAAACCATGGGAAAGAGCCTGGCATTGTGAAGTACACCATGGAGGAAATAATCAAAGTCACAAGAAACTTCTCCCCTTCTTTCAAGATTGGTCAAGGTGGTTTTGGTGCAGTTTACAAGGCCACACTCCTCGATGGAACTGTTGTTGCAGTAAAACGTGCTAAGAAGAGTGTACATGAGAAACATTTGGGGGTGGAGTTCATGAGTGAGGTCCAAACACTATCAAGGGTGGAACATTTGAACTTGGTCAAGTACTATGGATATTTGGAGCAAGGAGACGAGAGAATTGTTGTTGTGGAGTATGTTCCAAATGGAACCCTTAGGGAACATTTAGATTGCGTTCATGGAAACATTCTGGACCTTGCTGCACGTCTAGACATTGCAATTGATGTGGCTCATGCTGTCACCTATCTTCATATGTATGTAGATCATCCTATCATTCATAGGGACATAAAATCTTCCAACATTCTCCTCGCTGAAAATTTTCGAGCAAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCAGCCGATAGTGAATCTGGCATGACCCATGTTTCCACCCAAGTTAAAGGAACAGCTGGCTACTTGGACCCTGAATACTTGAAAACTTATCAACTCACTGAAAAGAGTGATGTGTATTCATTTGGCGTTTTGCTTGTTGAAATTATCACTGGCAGACGCCCCATTGAACCAAAATTTGAACTCAGGGAGCGAATAACAGCAAAATGGGCTATGAAGAGGTTTATTGAGGGAGATGCCATCTCGGTTTTGGACCCAAGATTGGATCAGACTCCAGCAAATACTTTAGCCCTAGAAAAGATACTTGAACTAGCTTTACAGTGCTTGGCTCCTCGAAGACAAAGCAGGCCTAATATGAAGAGATGTGCTGAGATCCTTTGGGCCATCCGTAAGGATTGTAGAGAGCTATCAGCTGCAAACTTTCGCTCACTTTCCACTACTTCCCAAAGGAGTAGCTCAATGAGAGAGTGA 1314 0.4673 MTTPYDHRRNPSSGHRSTPGRSPGYASSELSTSQYSTSSSGGRSPMVAAVRSVAGMFAGCFTPPETNSSKSLTDSEEFKSSSVVSNASRAGSQRGRGSNRGISISSYNSNHGKEPGIVKYTMEEIIKVTRNFSPSFKIGQGGFGAVYKATLLDGTVVAVKRAKKSVHEKHLGVEFMSEVQTLSRVEHLNLVKYYGYLEQGDERIVVVEYVPNGTLREHLDCVHGNILDLAARLDIAIDVAHAVTYLHMYVDHPIIHRDIKSSNILLAENFRAKVADFGFARQAADSESGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVEIITGRRPIEPKFELRERITAKWAMKRFIEGDAISVLDPRLDQTPANTLALEKILELALQCLAPRRQSRPNMKRCAEILWAIRKDCRELSAANFRSLSTTSQRSSSMRE* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01507 437 PANTHER OS01G0750732 PROTEIN 56 427 - -
Rops4g01507 437 ProSiteProfiles Protein kinase domain profile. 132 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01507 437 CDD STKc_IRAK 138 407 - -
Rops4g01507 437 MobiDBLite consensus disorder prediction 15 44 - -
Rops4g01507 437 ProSitePatterns Protein kinases ATP-binding region signature. 138 164 IPR017441 GO:0005524
Rops4g01507 437 MobiDBLite consensus disorder prediction 1 44 - -
Rops4g01507 437 Pfam Protein tyrosine and serine/threonine kinase 137 407 IPR001245 GO:0004672|GO:0006468
Rops4g01507 437 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 92 209 - -
Rops4g01507 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Rops4g01507 437 MobiDBLite consensus disorder prediction 64 108 - -
Rops4g01507 437 SMART serkin_6 132 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01507 437 Gene3D Phosphorylase Kinase; domain 1 97 209 - -
Rops4g01507 437 Gene3D Transferase(Phosphotransferase) domain 1 210 431 - -
Rops4g01507 437 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 210 421 - -
Rops4g01507 437 SUPERFAMILY Protein kinase-like (PK-like) 109 410 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01507 Rops-Chr4 37942573 37946372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01507 102 400 Receptor kinase-like Gene Family AT1G79620 44.444 4.22e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Rops4g01507 PK_Tyr_Ser-Thr 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01507 - - gmx:100792034 655.21