Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01505 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCACCTGCATGGAACACCAGTGTATTACTATTACCCACCAACTTTAGAAGAGCGCGAGTCTTTAACCTCTAATGATGGTGTGGCTGCTTCACTCACTGCTGGATTGCTGATAGGCTTGAACCTTGAAACGTCCACACCGGATACTTACCGGTCCCCTCCTGCACCTCTGCCCTATGATATGGTCCTGGGAGGTATAGTATCAACAGGCTCTGAGTCGGGCCGAGAAACAGTTAGTGGTAGTAGTTTTGAAACTTTAATTACATGTGAAGATATTGAAGAATCAGACTGCAAAGCTCTAGCTCATGCTGCACCTATATCTCCAAGGAAAGAAAAACTGTCAAAATCAAATGAATCTCATGCATTAGTGACAGAAGAAGAGGATGTCTGCCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACGAATTGTGAGCACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGAGATGATATTTGATCAGACACTGAACTAG 576 0.434 MGGCCCSARKPHLHGTPVYYYYPPTLEERESLTSNDGVAASLTAGLLIGLNLETSTPDTYRSPPAPLPYDMVLGGIVSTGSESGRETVSGSSFETLITCEDIEESDCKALAHAAPISPRKEKLSKSNESHALVTEEEDVCPICLEEYDVENPKTLTNCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01505 191 Pfam Ring finger domain 139 180 IPR001841 -
Rops4g01505 191 SMART ring_2 140 180 IPR001841 -
Rops4g01505 191 SUPERFAMILY RING/U-box 132 187 - -
Rops4g01505 191 CDD RING-H2_AIRP1-like 136 184 - -
Rops4g01505 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 186 IPR013083 -
Rops4g01505 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 188 - -
Rops4g01505 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Rops4g01505 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01505 Rops-Chr4 37913386 37917641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01505 1 191 C3H Transcription Factor Family AT4G00335 59.686 1.75e-78 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01505 - - gmx:100792561 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01101 8 23371578 23374098 Rops4g01505 4 37913386 37917641 PCT