Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01502 ATGGCAGGGTGGTCGCGGCTCGAAGGTGGGGTTTTCGCAGAAGATAGCAGGGTCGTTGTTGGAAAGCAATACGACAGGGTAAGGTGTCGTTTCGAGGAGTTCCTTGTTGAGTTCTTGAGGGAGATCTGTGCCCCGAATTGCTTTCGTCCTTTTCCTCCAATGCTAGGTGATGGACAGCACGTAGATTTGTACAAGCTGTTCATGGTGGTGAAGGGGAAGGGAGGATACGACGCCGTTTGTAATGGAAAGTTGTGGGATTTGGTTGGGGAGGAAAGTGGTTTGGGAGTGAGTGTTGGTTCTTCTGTTAAACTGGTTTATAGTAAGTACTTGGGTGCTTTTGATGCTGCATGGGTGAAGAAAGTTGCTGATAGTAAGATTTCCCCTGAGTGTGGTTTGGTGGATGATAGTGATAAGTTTGGTAGGCGTTTGATGGAGTTGCAAGCGGAGGTGAAAGGTGTGTTGTCGAATCGTGCCGAGGATGAGGTGGATGGAGAGAGGTTCAAGGGTGAATTGGATGATGGGAGGATGTTGTGTGGTATTAATGAGGTGAATGATTTTAATTTGGAGTCTAATGGAGACCAAGAAGTTCGGAATGGAGGGTGTTATGATTCGGATATGCCGAACCGTGAGACAATGAATGAATCTGTTATCAGAAACTTGTTTGAGGGTGATGATGCCATGGAAGTATTGGAAGAGTTTGATGGAGGGAAAATGTCTGCAGATGTTTCTGATGGGGTGAACAGCAGCATGCCTGGATTGCTGAGTGGAAGTGAGAAGGGTGGTGATGATATTGGTGTCTTGGAATTGGATTCATCTAGTGGTGATGGAGGGATTTCTGGTTGTAAGAGGAAGAGAGAGTCCGTGTGTGATTTACTGAGTTGGGTTACCGATGTTGCAAAAAATCCATGTGATCCTGTAGTTGGTTCATTACCTGAAAAGTCAAAATGGAAGTCCTACAGTGATCAGGAGGTCTGGAAGCAGGTTTTGTCGTTTCGTAAGGCTGTATTTCTCAATAGAGGTTCTGAGTCAAGCAGTGAAAAACATTCTTGGCAGAGTCAGAAGATGCATCCTTGCTTGTATGATGATCACCTTGGGGCATCCTACAATCTTCGAGAGAGGTTGACATATGACAAGAAGCAATTATTTGGAAAACTTACATCAGCTGCACGAAGCTCTTCAGATTCATCTGTAGGAACTGAAGGAGATTTGGACAAAACACCAAGTCCTCATAGTGCAGATCGTGCTGAGAAACAGTTGCATAATTCCTCTGATGCACTTTCAGGTGTTGATAGATGTGCGACGATACGTATCCCTCTGGGGCCGAATCATCAAGCTAAAGTACCAGAGTGGACTGGAATGACTTCTGAAAGTGATTCTATATGGTTAGGTGCCCACATATGGCCACCGGAGAAAGTAAGTTCCAGACTTATTGAAAGGGACCCCATAGGAAAGGGAAGGCAAGATTCATGTGGCTGCTTCATGCCAGGTTCTGTTGAGTGTGTCAGATTCCACATTTCTGAGAAAAGGTCTAAAGTTAAGCTTGAACTAGGTGAGGCTTTTTACAAATGGAATTTTGATAAGGTAGGTGAAGATGTTAGACATTTGTGGACAGATGAAGAACAGAAAAAATTCAAAGATGTGGTACAATTCAACCCTACATCATCTGAGAGATATTTCTGGGATCATATTTTTAAAACATTTCCAAAGAAGAGCAGGGCAGATTTAGTTAGCTACTATTTCAATGTCTTTCTCTTGCAACGCAGAGGATACCAGAATAGGCACACTCCTGATAACATTGACAGTGATGATGATGAATCAGAATATGGACCTTTGAGGAATGTTTTTGGACACCAGACTCAGAAATCACGCAACTCCATCTTATTAACCCCCAAAAAGTCACCAACAAAGGGAAAATAG 1917 0.4366 MAGWSRLEGGVFAEDSRVVVGKQYDRVRCRFEEFLVEFLREICAPNCFRPFPPMLGDGQHVDLYKLFMVVKGKGGYDAVCNGKLWDLVGEESGLGVSVGSSVKLVYSKYLGAFDAAWVKKVADSKISPECGLVDDSDKFGRRLMELQAEVKGVLSNRAEDEVDGERFKGELDDGRMLCGINEVNDFNLESNGDQEVRNGGCYDSDMPNRETMNESVIRNLFEGDDAMEVLEEFDGGKMSADVSDGVNSSMPGLLSGSEKGGDDIGVLELDSSSGDGGISGCKRKRESVCDLLSWVTDVAKNPCDPVVGSLPEKSKWKSYSDQEVWKQVLSFRKAVFLNRGSESSSEKHSWQSQKMHPCLYDDHLGASYNLRERLTYDKKQLFGKLTSAARSSSDSSVGTEGDLDKTPSPHSADRAEKQLHNSSDALSGVDRCATIRIPLGPNHQAKVPEWTGMTSESDSIWLGAHIWPPEKVSSRLIERDPIGKGRQDSCGCFMPGSVECVRFHISEKRSKVKLELGEAFYKWNFDKVGEDVRHLWTDEEQKKFKDVVQFNPTSSERYFWDHIFKTFPKKSRADLVSYYFNVFLLQRRGYQNRHTPDNIDSDDDESEYGPLRNVFGHQTQKSRNSILLTPKKSPTKGK* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01502 638 ProSiteProfiles ARID domain profile. 25 118 IPR001606 GO:0003677
Rops4g01502 638 MobiDBLite consensus disorder prediction 390 423 - -
Rops4g01502 638 Pfam ARID/BRIGHT DNA binding domain 36 114 IPR001606 GO:0003677
Rops4g01502 638 SUPERFAMILY ARID-like 29 119 IPR036431 GO:0003677
Rops4g01502 638 Gene3D - 18 127 IPR036431 GO:0003677
Rops4g01502 638 MobiDBLite consensus disorder prediction 613 631 - -
Rops4g01502 638 CDD SANT 536 583 IPR001005 -
Rops4g01502 638 SMART ELM2_2 437 487 IPR000949 -
Rops4g01502 638 SMART bright_3 26 119 IPR001606 GO:0003677
Rops4g01502 638 MobiDBLite consensus disorder prediction 594 610 - -
Rops4g01502 638 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 22 635 - -
Rops4g01502 638 CDD ARID 30 114 - -
Rops4g01502 638 SMART ARID_2 22 114 - -
Rops4g01502 638 MobiDBLite consensus disorder prediction 406 420 - -
Rops4g01502 638 MobiDBLite consensus disorder prediction 594 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01502 Rops-Chr4 37859657 37863318 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops4g01502 ARID 3.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01502 - - gmx:100779445 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01106 8 23458373 23460299 Rops4g01502 4 37859657 37863318 PCT