Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01464 ATGACCTCTGGTGCGCGTGTTTTTCATTTTCGGTTCTTTCAAGAAAAAGAAAGACTGGAATTCAGTAATGGATGGAATTCTTTCATTCTGGAATGCAACCTGGCAGACAAACCAAAAGTTGTGTTGAAATTCCATGGCAAATCCTTCTTTACTTTTCATGAAGAAAATCAGTTTGTTCAGCCCCACGTGAAGACTGAGACAGAGGATCTTTCTCCTGTATCCGATTCTGAACCTGTCATGGGTCGGATTACTTTAACCCCTTACAGTGTTTCCGAAAACCATCAGAACCTTCCAACGTCTTTTGTTAGAAGCTGTTTGAATCTGAGATTGAAGCATGTGACGTTGGATCTAGAAGGTGGAAAGAGTTGGAGATTTGGATTGTACAACACAGACTCTAGGCCTAACCAAGCAAGGATAAGTACAGGCTGGAAGGATTTTTGCTCTGCATTGGGTTTAAAACCAGGAGACAAGATAGCGTTCAAACTCATAAATGGATTCAAGAATCATCTTTTTGGAATTATTGAACGTTGTTGA 534 0.4026 MTSGARVFHFRFFQEKERLEFSNGWNSFILECNLADKPKVVLKFHGKSFFTFHEENQFVQPHVKTETEDLSPVSDSEPVMGRITLTPYSVSENHQNLPTSFVRSCLNLRLKHVTLDLEGGKSWRFGLYNTDSRPNQARISTGWKDFCSALGLKPGDKIAFKLINGFKNHLFGIIERC* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01464 177 SUPERFAMILY DNA-binding pseudobarrel domain 75 169 IPR015300 -
Rops4g01464 177 SMART B3_2 80 174 IPR003340 GO:0003677
Rops4g01464 177 Gene3D - 62 174 IPR015300 -
Rops4g01464 177 ProSiteProfiles B3 DNA-binding domain profile. 80 177 IPR003340 GO:0003677
Rops4g01464 177 Pfam B3 DNA binding domain 85 174 IPR003340 GO:0003677
Rops4g01464 177 CDD B3_DNA 84 165 IPR003340 GO:0003677
Rops4g01464 177 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 21 165 IPR039218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01464 Rops-Chr4 37162540 37163307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01464 85 163 B3 DNA Binding Superfamily AT4G31615 41.975 1.50e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops4g01464 B3 7.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01464 - K09287 soe:110775756 56.9954