Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01461 ATGAACAACAACAACAACACCAACAACAGACCGAGGTACCCGCCTGGAATCAACTATGGACGAGGGGGTCCGAATCCCAACCTAAACCAGAACCCGAACCAGCATCACAACCAGAACCCTGCCTTTCAGCAAAGGCCACCTTACCACCACCAACAACAGCAGCAGCAGCAGCAGCACTATGTGCAGAGGCATATGGTGCCGCAACAACAACAGCTTCAGCATCAACAACAATGGCTGAGAAGGGCACAACTGGGTGCTGCCTCAGAATCGAACTTGGCTGACGAGGTCGAGAAGACCGTCCAATCAGAAGCTGTTGACTCCAGTTCACAAGATTGGAAGGCAAGACTAAGTATTCCGGCTCCTGATACACGCTATAGGACAGAGGATGTGACGGCAACTAAAGGAAATGAATTTGAGGATTATTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAAGCCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAGAATTGATCAGGATAATAATGTTATTCAAGTTGTTATCCTGGTCCCAACACGAGAGTTGGCTTTGCAGACATCTCAAGTATGTAAAGAGCTTGGAAAGCATTTGAAAATTCAAGTTATGGTTACAACTGGTGGTACCAGTCTGAAAGATGATATAATGCGTTTATATCAACCAGTTCATTTACTGGTTGGAACTCCAGGAAGAATATTGGATCTTGCTAAGAAGGGTGTTTGTATTCTGAAAGATTGCGCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCATTTTCTTCCTACAAACCGTCAAATCCTGATGTTTTCGGCAACATTTCCAGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATCACACAATATTATGCATTCGTGGAAGAGAGACAGAAAGTCCACTGCCTGAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCGGTGAATCGTGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTACATTCATGCAAAGATGTTGCAGGACCATCGGAATAGAGTATTCCATGATTTCCGCAATGGTGCATGCCGAAACCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATCAATTTTGATTTTCCCAAGAACGCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTGGGTTTAGCAGTGAACTTGATCACCTATGAGGATCGCTTTAATTTATATAGAATCGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACAAATTGATCAGGCAATCTATTGCCGGTGA 1533 0.4253 MNNNNNTNNRPRYPPGINYGRGGPNPNLNQNPNQHHNQNPAFQQRPPYHHQQQQQQQQHYVQRHMVPQQQQLQHQQQWLRRAQLGAASESNLADEVEKTVQSEAVDSSSQDWKARLSIPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALERIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIQQLIHFLPTNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01461 510 Gene3D - 94 340 IPR027417 -
Rops4g01461 510 SUPERFAMILY beta-sandwich domain of Sec23/24 25 77 - -
Rops4g01461 510 Gene3D - 341 510 IPR027417 -
Rops4g01461 510 FunFam ATP-dependent RNA helicase DDX6 341 510 - -
Rops4g01461 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 507 IPR001650 -
Rops4g01461 510 MobiDBLite consensus disorder prediction 1 73 - -
Rops4g01461 510 CDD SF2_C_DEAD 348 477 - -
Rops4g01461 510 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
Rops4g01461 510 Pfam DEAD/DEAH box helicase 161 325 IPR011545 GO:0003676|GO:0005524
Rops4g01461 510 Pfam Helicase conserved C-terminal domain 362 468 IPR001650 -
Rops4g01461 510 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 70 509 - -
Rops4g01461 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 490 IPR027417 -
Rops4g01461 510 FunFam ATP-dependent RNA helicase DDX6 117 340 - -
Rops4g01461 510 CDD DEADc_DDX6 138 338 - -
Rops4g01461 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 337 IPR014001 -
Rops4g01461 510 MobiDBLite consensus disorder prediction 23 73 - -
Rops4g01461 510 SMART helicmild6 387 468 IPR001650 -
Rops4g01461 510 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 283 291 IPR000629 -
Rops4g01461 510 SMART ultradead3 155 351 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01461 Rops-Chr4 37127228 37134787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01461 136 507 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 7.70e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01461 K12614 - tcc:18614173 861.677