Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01460 ATGGGAAGGACACCATGTTGTGACAAGATGGGGTTGAAGAAAGGTCCTTGGACAGCTGAAGAGGATGAGATTCTTGTTAATTATATCAAGAAAAACGGTGGTCATGGAAGCTGGCGTTCTCTTCCCAAGTCAGCAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTAAGATGGACTAACTACCTCAGACCTGATATTAAACGTGGCCCCTTTACACCTGAGGAAGAAAAACTAGTCATACAACTTCATGCCATCCTTGGAAATAGGTGGGCTGCTATTGCTTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAATTTATGGAATACCCACTTGAAAAAACGTCTCATATGTATGGGACTTGACCCACAAACACATGAGCCAGTGGCTTCTTCATGGTACCCTATAGACAAGGCACAAACATCCATTGCCACACGCCACATGGCTCAGTGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTTTCAAGAGAGTCATCTTTGTTCAACAACACTTCCTTTGTCAACAACAAAAAAACTGATTCTGACTATTTCCTACGTATATGGAACTCAGAAGTTGGACAATCTTTTAGAACCATTCACAAAGATGACAAAACTAGTTGCCATAGTCCTGTTTCTCATGGATCATCTTCCAACAAATGTGGATCACTTTCTGCCACTACAATGGATTTGGCCTCCAACCCATTTGAATCCTCAACTCCAGGAAGCAATGTGAAGGAAGATTTGGAGTGGAAAAACTCAGAGTCATTTGTTGCAAGTTTGATGCATGGCTCTGATTCATCAAGCTCTAATGACCTTGAAGACTCATCTGACACTGCATTACAGCTCTTGTTGGACTTTCCTTTAAACAATGACATGAGCTTCTTAGAATAG 897 0.4236 MGRTPCCDKMGLKKGPWTAEEDEILVNYIKKNGGHGSWRSLPKSAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHEPVASSWYPIDKAQTSIATRHMAQWESARLEAEARLSRESSLFNNTSFVNNKKTDSDYFLRIWNSEVGQSFRTIHKDDKTSCHSPVSHGSSSNKCGSLSATTMDLASNPFESSTPGSNVKEDLEWKNSESFVASLMHGSDSSSSNDLEDSSDTALQLLLDFPLNNDMSFLE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01460 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops4g01460 298 FunFam Myb transcription factor 11 68 - -
Rops4g01460 298 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Rops4g01460 298 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops4g01460 298 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops4g01460 298 FunFam MYB transcription factor 70 117 - -
Rops4g01460 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops4g01460 298 Gene3D - 11 68 - -
Rops4g01460 298 SMART sant 67 115 IPR001005 -
Rops4g01460 298 SMART sant 13 64 IPR001005 -
Rops4g01460 298 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops4g01460 298 CDD SANT 16 62 IPR001005 -
Rops4g01460 298 Gene3D - 70 117 - -
Rops4g01460 298 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Rops4g01460 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 260 - -
Rops4g01460 298 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01460 Rops-Chr4 37115087 37117784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01460 1 298 MYB Transcription Factor Family AT3G61250 65.232 1.89e-128 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops4g01460 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01460 K09422 - gmx:100800408 440.269