Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01453 ATGGATATAGCTTTTAGCTTACCACAGTCAAAAGTGGTGTTGGATTCTCGCATTGTATTTGGATGGAAAGGTTTTGGTTGTGCTTTTCTTGGCAAGTCAAGGACTATTTTGAAAGCTCATTTTAGTGGGATGAACAAGATTGGTAGTTGTAGGGGTAACTCAAGAGTGGCTTGCATGGTGGGTGAGTTCAAAGTTTCAATTTTGAAGAGGAGTTTGTCTTGTAGGAGTGATACCCTTTTTAAGGGGAAAAGGGCATTTTGGTCAAAGTGTCAAGGTAATGATTCTTTAGCATATGTAAATGGCAATGGTAGGAATGTTGATAACTTGCAAGGTATTGATGAGGACTATGATTCAAGGTCCATTTCAAGGGCTGAATTGAGTGAACCTTTGGGTGAAGAAGAAGAAGAAGAAGGGCAAGGAGAGATACAAAGTGTGGATGAATTGAAAGAACTGTTGCAGAAGGCCTTGAAAGAATTAGAAGATGCTAGAGCAAATAGTATCATGTTTGAGGAAAAGGTTAAAAAGATATCAGAGAATGCGATTTCTTTGCAGGATGTAGCAGCTAGTGCTTGGAATGATGTTAATTCTAAACTTGATATCATCCAAGAAATTGTCAATGTAGAATTTGTTGCCAAAGAAGCTGTTCAAAATGCAACAATGGCTCTTTCTTTAGCTGAGGCGAGGCTTCAAGTAGCTGTTGAATCTTTGGATGTTGCAAAAGAAGTTTATAGCTCCCTACAAGGTTCTGATGAGAGTGATGGTGATAAAGAAAAGGTAGAAGAGGAGAAAGCACTTATGGTTGCTCGGGAAGATATCAAGGAATGTCAAACAAATTTGACAAACTGTGAGGCCGAGCTGAGGCGCTTGCAGAGTAGAAAGGAGGAGTTGCAGAATGAAGTGAACAAGTTGCATGACATTGCAGAAAAGGCTCAGTTGAATGCAGTGAAAGCTGAGGAGGATGTCACAAACATAATGCTTTTAGCGGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCACAGCGTGTGAATGATGCAGAGATCGTGTTACTGAAAGCTGACAAGTCTGCTTCTAGTTTAAATGCTGATACCGCAGACACTCCACAAGTACAAGATGTTGTGGGTGTTCCTGAGGAGGAGAAAATGGTTCAACAATTTTCTGGTGATGATGGTGTGAAAAGAGAGCTTGATTTCTCAAGTGATGATGAGTCTTTGCTTGCAACACAATCACCAGAGACACTATCTAATAAAACAAGCCAAATTTTGGAAGATATAACACAGTCTGATTATCTGAGTGATCATGAGAATGGACAGTTAAGCTCAGACTCTTCTAAAGAAGCTGAAATCGAAGTAGAGAAGTCAAAGAATGTAGTTCAACCAAAAAAACAGGAAACACAGAAGGATTTGACTAGAGATAATTCACCACTTGCTCCCAAGACATTATTGAAGAAGTCTTCTAGATTTTTTCCTGCATCATTTTTCTCTTTTACTGCAGATGAGACTGATTACTCACCATCATCAGTTTTCCATGGTCTTGTGGAGTCTGCACAGAAGCAGTTACCCAAGCTGGTTATGGGGTTATTATTAATTGGAGCAGGGGTTTCCTTCTATGTCAATAGAGCAGAGAGGAGTTCTCAGCTGCTTCAGCAGCCAGAAGTCATTGCAACCACTGTTGAAGAAGTTTCCTCAAGTGCAAAGCCTCTGGTTAGACAACTTCAGAATCTCCCAAAGAGAATTAAGAAAATTATTACGTCATTACCGGAACAAGAGGTGAATGACGAGGAAGCCTCCCTCTTTGACATGCTTTGGTTATTACTTGCAAGTGTTGTATTTGTGCCGATATTTCAAAAAATTCCTGGAGGCAGTCCTGTTCTTGGTTACTTGGCAGCTGGTATCTTGATTGGGCCTTATGGTCTCTCCATCATTCGCAATGTTCATGGGACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCTCAGGTTTTGTTGACTGCTGTGGTTGTTGGCTTGGTGGCTCATTATGTTTGTGGCCAAGCTGGCCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCGTCGACTGCTGTTGTTCTGCAGGTATTACAGGAGCGAGGTGAGAGCACATCACGGCATGGACGGGCTACATTTTCTGTTTTACTTTTTCAGGATTTGGCTGTTGTTGTCTTGCTAATACTCATACCTCTTATTTCACCTAATTCTTCCAAAGGAGGGGTTGGCTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGCAGTTGCCATCACCATCATAATTGCAGGTGGACGATTGCTCCTTCGACCCATATATAAGCAGATTGCAGAAAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGACATTGCTCCATATCGTGGCCTTTTGTTGGGCCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTCCAGTCATTACAGGGGCACTGGGACTCTTGATATTTGGCAAGACTATCTTGGTTTCTTTGATTGGCAGAATTTTTGGTATTTCTCTCATTTCTGCCACTAGAGTTGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGTTGTCCTCTTTGCTATTTCTTGTTGTGGGAATTTCTATGGCCCTCACACCATGGCTAGCCGCAGGAGGCCAACTGATTGCTTCCCGTTTTGAGCTGCATGATGTTCGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGATCATATCATTATTTGTGGATTTGGGCGAGTTGGCCAGATCATTGCACAACTTCTTTCTGAGCGACTTATTCCTTTTGTTGCACTAGATGTGAGAAGTGATAGAGTGACAATTGGGCGTTCCCTGGGCCTCCCTGTGTACTTTGGGGATGCTGGTAGTCGAGAGGTCCTACATAAAGTTGGGGCTGAAAGGGCAAGTGCTGCAGCAGTAACTCTAGATTCCCCTGGTGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGCACTTCCCAAAAGTGAAAACTTTTGTTCGTGCTCATGATGTTAATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAGCTAGCAGCTGCAGTGCTTTCTCAGGTTAAACTTCCTACATCAGAGATTGCAGCAACGATAAATGAATTCAGATCCCGCCATCTGGCTGAGCTCACAGAACTATCTGAAACAAATGGAAGTTCTCTTGCATATGGATATAACAGAATTATGAACAAGCCCAAATCTAAATCCCCAGATTCATTGGATGAGACACAACAATTCAGTTGGGTGTCCCAAAACGCAAAACCCTACACGCCGTTCTCGTTTTCTTCTCCGATCGTCGTTCTTCTCTCCGGAAGAATGAGGGCTACAATGATGCTTAGGGCTTTGAACCAGCAATTTCTCGGAATTGCTGGTGACACTGCAAACGTTGTTGCTAAGAAGATGCCGCCACCGCCAGCTCCTCCAGCGTCGCGAAAACCGGCATTCATAGACGCATTCATGTACAAGATGAAGAATAATCGAGATCTTCTGGTGAACAAGACAATTTGGTCACGGAGATCAACTATCTTGCCGGAATTTGTTGATACCACGGTCAAGATTTACAATGGGAAAACCACTGTTCGATGTAAGATCACTGAGGGAAAAGTGGGTCATAAGTTTGGTGAGTTTGCTCTCACTAGGAAACGTAAAACGAGAGAACAATCCAATGCCAAAAATATTAAACAACTTAAGAAAAAGAAGTGA 4050 0.423 MDIAFSLPQSKVVLDSRIVFGWKGFGCAFLGKSRTILKAHFSGMNKIGSCRGNSRVACMVGEFKVSILKRSLSCRSDTLFKGKRAFWSKCQGNDSLAYVNGNGRNVDNLQGIDEDYDSRSISRAELSEPLGEEEEEEGQGEIQSVDELKELLQKALKELEDARANSIMFEEKVKKISENAISLQDVAASAWNDVNSKLDIIQEIVNVEFVAKEAVQNATMALSLAEARLQVAVESLDVAKEVYSSLQGSDESDGDKEKVEEEKALMVAREDIKECQTNLTNCEAELRRLQSRKEELQNEVNKLHDIAEKAQLNAVKAEEDVTNIMLLAEQAVAFELEAAQRVNDAEIVLLKADKSASSLNADTADTPQVQDVVGVPEEEKMVQQFSGDDGVKRELDFSSDDESLLATQSPETLSNKTSQILEDITQSDYLSDHENGQLSSDSSKEAEIEVEKSKNVVQPKKQETQKDLTRDNSPLAPKTLLKKSSRFFPASFFSFTADETDYSPSSVFHGLVESAQKQLPKLVMGLLLIGAGVSFYVNRAERSSQLLQQPEVIATTVEEVSSSAKPLVRQLQNLPKRIKKIITSLPEQEVNDEEASLFDMLWLLLASVVFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLLTAVVVGLVAHYVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITIIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVITGALGLLIFGKTILVSLIGRIFGISLISATRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFELHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVTIGRSLGLPVYFGDAGSREVLHKVGAERASAAAVTLDSPGANYRTVWALSKHFPKVKTFVRAHDVNHGLNLEKAGATAVVPETLEPSLQLAAAVLSQVKLPTSEIAATINEFRSRHLAELTELSETNGSSLAYGYNRIMNKPKSKSPDSLDETQQFSWVSQNAKPYTPFSFSSPIVVLLSGRMRATMMLRALNQQFLGIAGDTANVVAKKMPPPPAPPASRKPAFIDAFMYKMKNNRDLLVNKTIWSRRSTILPEFVDTTVKIYNGKTTVRCKITEGKVGHKFGEFALTRKRKTREQSNAKNIKQLKKKK* 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01453 1349 PRINTS Ribosomal protein S19 family signature 1304 1316 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops4g01453 1349 PRINTS Ribosomal protein S19 family signature 1284 1303 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops4g01453 1349 PRINTS Ribosomal protein S19 family signature 1316 1331 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops4g01453 1349 Pfam Sodium/hydrogen exchanger family 602 973 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Rops4g01453 1349 ProSitePatterns Ribosomal protein S19 signature. 1304 1328 IPR020934 GO:0003723
Rops4g01453 1349 Gene3D - 593 979 IPR038770 -
Rops4g01453 1349 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 180 1189 - -
Rops4g01453 1349 Hamap 30S ribosomal protein S19 [rpsS]. 1227 1340 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops4g01453 1349 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 604 884 IPR004771 GO:0006812|GO:0008324|GO:0016020
Rops4g01453 1349 FunFam K(+) efflux antiporter 2 chloroplastic 593 979 - -
Rops4g01453 1349 MobiDBLite consensus disorder prediction 431 476 - -
Rops4g01453 1349 MobiDBLite consensus disorder prediction 401 418 - -
Rops4g01453 1349 FunFam Ribosomal protein S19, mitochondrial 1257 1343 - -
Rops4g01453 1349 MobiDBLite consensus disorder prediction 438 468 - -
Rops4g01453 1349 MobiDBLite consensus disorder prediction 398 418 - -
Rops4g01453 1349 FunFam K(+) efflux antiporter 2 chloroplastic 1001 1165 - -
Rops4g01453 1349 Coils Coil 265 320 - -
Rops4g01453 1349 Gene3D 30s Ribosomal Protein S19; Chain A 1258 1343 IPR023575 GO:0003735|GO:0005840|GO:0006412
Rops4g01453 1349 ProSiteProfiles RCK N-terminal domain profile. 1005 1127 IPR003148 GO:0006813
Rops4g01453 1349 SUPERFAMILY Ribosomal protein S19 1260 1332 IPR023575 GO:0003735|GO:0005840|GO:0006412
Rops4g01453 1349 MobiDBLite consensus disorder prediction 1330 1349 - -
Rops4g01453 1349 Gene3D - 1001 1165 - -
Rops4g01453 1349 Pfam Ribosomal protein S19 1283 1332 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops4g01453 1349 Pfam TrkA-N domain 1006 1119 IPR003148 GO:0006813
Rops4g01453 1349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1002 1143 IPR036291 -
Rops4g01453 1349 Coils Coil 142 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01453 Rops-Chr4 37030221 37053830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01453 90 1194 Inorganic Solute Cotransporters AT4G00630 70.930 0.0 1424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01453 K03455 - gmx:100791174 1787.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01453 4 37030221 37053830 Rops4g01453 4 37030221 37053830 ECH