Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01427 ATGGAAGAAACCTCTTCTCAGAGAAAGGCTCAGAGGAAGAAGAAGCGAACGCTAGCGGCTCTGGACTCTGAAATCGAACGTCTCAACTCACTGCCATGGAACTCTTCTCTTCCTCAAAACGAGGATGATGACGCTTTTTCCTTGTTCATTGGCTCCAACGAACTCGAAGGAGGTTTTCTTTCGCTTGAGGAGATTGATGAGGCTGAGTATGGTTTGGATATTCATGAACCTGAAGATGGCAACAGGAAGCACAAGTCTAAACAGGGCAAGAAATTGAAGAAACAGAAGCAAGATGGAGTTGATGATGGTGCTAGTGGTGATGAGCTTGAAGCGAAATCAGATGGAGAAATGGTTAAGGATGAGGAAATGAAGTCTAAAGAGAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAAAACAAGGCTGCTAGTGAAAACCAGAAAGTTGAGCAGTCAGATACTGGTCTAGATACTGATGTGAAGGATGATGTTGAGGAAGAGAACATTGATGAAACTGAATTTTATGCATGGAACGAGTTGAGGCTTCATCCTCTCCTAATGAAAGCAATATACAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAGGGGAAGGATGTTGTCGGGGCTGCAGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGCATTTTGGAGGAGCGAGAGAAGGCTGGAAAGATGGTTGAAGAAAAGGGTGAAGAAGCCGAAAAATATGCTTCTACGGGCATTTTGAGGAGTCTTATTATTGCTCCGACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGCATATCAATATTAGGGTGACCCCTATAGTTGGAGGGATTTTAGCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGGGCTGAGATTGTGGTCGGGACTCCAGGGAGGTTATGGGAACTCATATCAGCCGGAGAAAAACATCTAGTTGAGTTACATTCATTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTCCAAAATGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCGATGTCCAATAACTCATCTGAAGATAATTCTCAATATGCACAAAATTGTGTTACAGTTTCTAGCTACCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTCCGCAAGAAGCTAAAGCGTGGTTCGATTCAGCAAAAGCAATCATTGACAGATGGATTGAATTCTATTGAAACTCTTTCTGAGCGAGCAGGAATGAGATCCAATGCTGCAATTATTGATCTAACCAATCCATCAATATTAGCAACTAAGCTTGAGGAATCATTTATTGAATGCAGTGAAGAAGATAAAGATGCCTGTATGTATTATATTCTGACTGTTCATGGACAAGGCCGCACAATAGTTTTCTGTACGTCCATTGCAGCTTTGCGCCATATTTCTTCCATATTGCGCATTCTTGGCGTCAATGTTTGGACTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGGCCATTGATCGCTTTCGGGAAAATGAAAATGGCATACTAGTTGCTACTGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAGCTGTTGTCCATTATCAGCTTCCACATTCAGCGGAAGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCACCGAAAGATACATCGAAGTTTGCTTCATTGTGCAAATCATTTTCGAAGGATACCTTTCAGCGGTTTCCTTTAGAGAACTCATACATGCCAGAGGTCCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACAAGGAAGGTTTCCCAGGAGAAAGCTGAGAAAAGCTGGTTTGATCGAAATGCTAATTCAGTGGAATTAGTTACAGAAAATTATGACAGTGAGGAGGAACAAGTCAACAAATATAAGCAAATGAAAGCCAGCTCTAAACAATTGAAGAAATTGCAGGAGGAGCTCAATATGCTGATTTCACGTCCTTTACAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCTCTAATGCAGGAACAATTGCAACAATTAGCAAAGCAAAAACTAAGTGATCAACAGGGTTCAAGTCTAGGCAGAAAGGGAAAATTGGTTGTGATCGGTCAAGATTGTGTGGAAGCACTTCAGGCACTTCGAAGTGCTGGTGAAGAGGTGTGCATGGATGTCAAAGATTTGGCAGGAAAACAGAGAAATATGCAGAATTTAAAAAGAAAAAGAAAAGAGGAGAAGAAACGTTTGCATGATCAGCGTAGAAAGCAGAAGAGAAAGCTAAAGCAGGAAGATTAA 2427 0.4129 MEETSSQRKAQRKKKRTLAALDSEIERLNSLPWNSSLPQNEDDDAFSLFIGSNELEGGFLSLEEIDEAEYGLDIHEPEDGNRKHKSKQGKKLKKQKQDGVDDGASGDELEAKSDGEMVKDEEMKSKEKKKKKKKKKKKNKAASENQKVEQSDTGLDTDVKDDVEEENIDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKAGKMVEEKGEEAEKYASTGILRSLIIAPTRELALQVTDHLKAVAKHINIRVTPIVGGILAEKQERLLKARAEIVVGTPGRLWELISAGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNNSSEDNSQYAQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSIQQKQSLTDGLNSIETLSERAGMRSNAAIIDLTNPSILATKLEESFIECSEEDKDACMYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGVRAVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSLARQIDKITRKVSQEKAEKSWFDRNANSVELVTENYDSEEEQVNKYKQMKASSKQLKKLQEELNMLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLAKQKLSDQQGSSLGRKGKLVVIGQDCVEALQALRSAGEEVCMDVKDLAGKQRNMQNLKRKRKEEKKRLHDQRRKQKRKLKQED* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01427 808 Pfam Helicase conserved C-terminal domain 472 580 IPR001650 -
Rops4g01427 808 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 174 202 IPR014014 GO:0003724
Rops4g01427 808 MobiDBLite consensus disorder prediction 25 44 - -
Rops4g01427 808 Coils Coil 118 151 - -
Rops4g01427 808 MobiDBLite consensus disorder prediction 71 164 - -
Rops4g01427 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 369 IPR027417 -
Rops4g01427 808 Coils Coil 772 807 - -
Rops4g01427 808 Gene3D - 121 420 IPR027417 -
Rops4g01427 808 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 621 IPR001650 -
Rops4g01427 808 MobiDBLite consensus disorder prediction 779 808 - -
Rops4g01427 808 Coils Coil 657 697 - -
Rops4g01427 808 PANTHER RNA HELICASE 130 741 - -
Rops4g01427 808 Pfam DEAD/DEAH box helicase 198 406 IPR011545 GO:0003676|GO:0005524
Rops4g01427 808 CDD DEADc_DDX24 185 450 - -
Rops4g01427 808 Gene3D - 458 701 IPR027417 -
Rops4g01427 808 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 345 353 IPR000629 -
Rops4g01427 808 CDD SF2_C_DEAD 461 590 - -
Rops4g01427 808 MobiDBLite consensus disorder prediction 779 800 - -
Rops4g01427 808 SMART helicmild6 500 581 IPR001650 -
Rops4g01427 808 MobiDBLite consensus disorder prediction 93 127 - -
Rops4g01427 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 597 IPR027417 -
Rops4g01427 808 SMART ultradead3 193 423 IPR014001 -
Rops4g01427 808 MobiDBLite consensus disorder prediction 28 42 - -
Rops4g01427 808 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 423 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01427 Rops-Chr4 36607568 36616514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01427 175 621 Eukaryotic Initiation Factors Gene Family AT5G11200 27.331 1.56e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01427 K14805 - gmx:100806018 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01427 4 36607568 36616514 Rops4g01427 4 36607568 36616514 ECH