Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01393 ATGAACATGATGCGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCCATTTCTTCAGATCCTGGAGGGGATTCAAACACCAAAAGAGCTAAGGTTGATCAAGAAACTAGAGGGAAGGTCAATGAAGGAATAAATACTTCAGGTGGCAAAGATCAGGAGCAGCATGTGGATGCATCAAAAGAAGCAACAGTTGACACATCCGATGTATCTACTGTAGCTAGAACTGAGAAGTTGGGTCTTGATGAACTTCCGAAAGAATTACATGAAATGAAAATTAGAGAAGAGAAAAGCAAAAACAACAATGAAAAGGATATGGAAGCAACTATAGTGAGTAGTAATGGAACAGAAACAGGTCAAATAATTACAACTACTATTGGTGGTCGAGATGGACAACCGAAGCAGACAATCTCGTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTCGGTGTAGTTTTTCAGGCCAAGTGCCTTGAAACTGGTGAAGCAGTTGCCATCAAGAAGGTGCTGCAAGACAAGAGATATAAGAATAGGGAACTGCAGCGCCACATTAGGATGCAGCAACATATGCCTATCATTTATGTACAACTGTATACATACCAGATATGCCGCGCATTGAATTATTTACATGAAGTGATCGGCATCTGTCATAGGGACATCAAACCCCAGAACTTACTGGTTAATCCGCAGACACATCAATTAGTGATATGTGATTTTGGGAGTGCAAAGAAGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGAGCAACTCAATACACAACTGCAATTGATATGTGGTCTGTTGGTTGTGTTTTGGCTGAGCTCCTTCTAGGGCAGCCATTGTTTCCTGGAGAGAGTGGGGTTGATCAGTTAGTGGAAATAATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAGATGCATGAACCCAAACTACAATGAATTCAAGTTTCCTCAGATTAAAGCACACCCATGGCACAAGGTTTTTCAAAAGAGAATGCCGCCTGAAGCAGTGGATCTTGTGTCAAGGCTGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGCTGCATGTGCACACCCATTCTTCAATGATCTGCGAGACCCAAATGCAAGCTTGCCAAACGGGCGACCACTACCTCCTCTGTTCAATTTCACACCTCAAGAACTGGAAAATGCACCAGAGGAGTTGCGTCAAGTTCTCATTCCTCAGCATGCAAGGAGTTGA 1272 0.4277 MNMMRRLKSIASGRTSISSDPGGDSNTKRAKVDQETRGKVNEGINTSGGKDQEQHVDASKEATVDTSDVSTVARTEKLGLDELPKELHEMKIREEKSKNNNEKDMEATIVSSNGTETGQIITTTIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQRHIRMQQHMPIIYVQLYTYQICRALNYLHEVIGICHRDIKPQNLLVNPQTHQLVICDFGSAKKLVPGEPNISYICSRYYRAPELIFGATQYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFQKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFNDLRDPNASLPNGRPLPPLFNFTPQELENAPEELRQVLIPQHARS* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01393 423 CDD STKc_GSK3 133 381 IPR039192 -
Rops4g01393 423 SUPERFAMILY Protein kinase-like (PK-like) 137 407 IPR011009 -
Rops4g01393 423 FunFam Shaggy-related protein kinase kappa 174 422 - -
Rops4g01393 423 MobiDBLite consensus disorder prediction 9 25 - -
Rops4g01393 423 Gene3D Phosphorylase Kinase; domain 1 129 178 - -
Rops4g01393 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Rops4g01393 423 Pfam Protein kinase domain 176 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01393 423 Gene3D Transferase(Phosphotransferase) domain 1 179 422 - -
Rops4g01393 423 ProSiteProfiles Protein kinase domain profile. 26 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01393 423 SMART serkin_6 138 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01393 423 MobiDBLite consensus disorder prediction 1 70 - -
Rops4g01393 423 ProSitePatterns Protein kinases ATP-binding region signature. 144 168 IPR017441 GO:0005524
Rops4g01393 423 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 183 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01393 Rops-Chr4 35944939 35950206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01393 144 381 Core Cell Cycle Gene Families AT3G48750 33.333 2.43e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Rops4g01393 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01393 K00924 - gmx:100811346 729.939