Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01391 ATGAGTTTTGGGGGTTTTCTAGACAACAGCTCAGGTAGTGGTGGTGCTAGAAACGTAGCAGATATTCCTCATAGCAACGGAACCACTACTGAACACAACAACAACAACGATAGAATGCCATTTGGTGCAATCTCTCAACCACGCCTTGTGACTACTCCTACTTTGGCCAAATCCATGTTCAACTCTCCTGGGTTGTCTTTGGCACTTCAGCAAACCAATATAGATGGGCAAGAAGATGTTAATAGAATGGCTGAAAATTTTGAGCCAAATGGTTTGAGAAGGAGTCGGGAAGAAGAACAAAGCAGATCTGGTAGTGATAACATGGATGGTGCTTCTGGTGATGAACAAGATGCTGCCGACAATCGTCCTAGAAAGAAACGTTATCACCGACACACTCCTCAACAGATACAAGAGCTTGAAGCGTTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGACTTGAACTGAGTAAAAGGCTTTGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATAGGAGAACCCAAATGAAGACTCAATTGGAACGCCATGAGAACACACTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAACATGTCTATTAGGGATGCTATGAGGAATCCTATGTGTTCAAATTGCGGGGGTCCAGCTATTATTGGTGAGATTTCACTAGAGGAACAACATCTTCGGATTGAGAATGCCCGGTTGAAAGATGAACTAGACCGAGTTTGTGCACTTGCTGGCAAGTTTTTGGGTCGTCCCATTTCTTCATTGACAAACTCAATTGTTCCTCCATTGCCAAACTCAAGTTTGGAGCTTGGTGTTGGTGGCAATGGTTTTGGTGGAATGAGCAATATGCCTGCTTCAACATTGCCTTTGGGACCTGATTTTGGGGTAGGGATGTCTAACCCTTTAGCCATGGTGTCTCCTCCAACTAGACCAACTCCTGTGGTGACAGGTTTTGATAGATCAATAGAGAGGTCTATGTATCTTGAGCTTGCTTTGGCTGCAATGGATGAGTTGGTGAAGATGGCACAAACTGGTGAGCCTCTTTGGATTAGGAGTATAGAGGGGGGAAGAGAAATTTTGAACAATGAGGAATACATGAGAACTTTCACTCCTTGCACTGGCTTAAGATCCAATGGTTTTGTTTCTGAAGCCTCTAGAGAGACTGGGATGGTGATCATAAACAGCTTAGCCCTTGTTGAGACTCTTATGGATGCGAATCGATGGGCAGAGATGTTTCCTTGCATAATTGCTAGAACCTCCACCAATGAAGTGATTTCCAATGGAATAAACGGAACTAGAAATGGTGCACTTCAACTAATGCATGCTGAACTTCAAGTTCTTTCACCTTTGGTTCCGGTTCGTGAGGTCAGTTTCCTACGCTTTTGCAAGCAGCATGCAGAAGGGGTGTGGGCTGTGGTAGATGTGTCCATAGATACCATCCGAGAAACTTCTGGAGCACCAAGTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCTAATGGGTACTCCAAGGTGACATGGGTGGAGCATGCAGAATACGAAGAAACCCAAGTTCACCAGTTATACAGACCCTTGTTGAGTTCAGGCATGGGGTTTGGTGCACAACGCTGGGTGGCTACCCTACAACGCCAATGCGAGTGCCTAGCCATCTTAATGTCCTCAGCACCACCCTCTCGAGACCACTCAGCAATAACAGCAGGTGGAAGGAGAAGCATGCTGAAACTAGCACAAAGAATGACGAACAACTTCTGTGCTGGTGTTTGTGCATCAACGGTGCACAAATGGAACAAGTTGAACGCAGGGAACGTGGACGAAGACGTGAGGGTTATGACACGTAAGAGCGTCGACGATCCCGGCGAGCCACCGGGTATCGTACTCAGCGCAGCCACCTCCGTTTGGCTCCCAGTTTCACCTCAAAGACTCTTCGATTTCCTCCGTGACGAGAGGCTCCGAAGCCAGTGGGACATACTCTCAAATGGTGGTCCCATGCAAGAGATGGCCCACATCGCCAAGGGTCAAGATCACGGAAACTGCGTCTCTCTCCTCAGAGCCAGTGCGATAAATTCGAACCAGAGTAGCATGCTGATACTACAGGAGACATGCATAGACGCGGCTGGGTCGCTTGTGGTGTACGCGCCAGTGGATATTCCGGCCATGCACGTGGTCATGAACGGTGGTGATTCGGCTTACGTGGCATTGCTACCTTCTGGGTTCGCCATCGTCCCTGATGGGCCCGGGTCTCGTGGGTCGGATAATGGGCCCATAACAAACGACAGAGATAATGGTGGAGCGGCGCGTGTGAGTGGGTCCCTTTTAACTGTGGCGTTTCAGATACTCGTGAATAGTCTCCCCACGGCCAAGCTCACAGTGGAGTCAGTGGAGACGGTGAACAACCTCATCTCATGCACGGTTCAAAAGATCAAAGCAGCACTTCAATGTGAAAGTTAA 2487 0.4781 MSFGGFLDNSSGSGGARNVADIPHSNGTTTEHNNNNDRMPFGAISQPRLVTTPTLAKSMFNSPGLSLALQQTNIDGQEDVNRMAENFEPNGLRRSREEEQSRSGSDNMDGASGDEQDAADNRPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTNSIVPPLPNSSLELGVGGNGFGGMSNMPASTLPLGPDFGVGMSNPLAMVSPPTRPTPVVTGFDRSIERSMYLELALAAMDELVKMAQTGEPLWIRSIEGGREILNNEEYMRTFTPCTGLRSNGFVSEASRETGMVIINSLALVETLMDANRWAEMFPCIIARTSTNEVISNGINGTRNGALQLMHAELQVLSPLVPVREVSFLRFCKQHAEGVWAVVDVSIDTIRETSGAPSFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYEETQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAPPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSQWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGSDNGPITNDRDNGGAARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01391 828 ProSiteProfiles START domain profile. 327 563 IPR002913 GO:0008289
Rops4g01391 828 CDD homeodomain 124 182 IPR001356 GO:0003677
Rops4g01391 828 SMART HOX_1 123 186 IPR001356 GO:0003677
Rops4g01391 828 CDD START_ArGLABRA2_like 331 559 - -
Rops4g01391 828 SUPERFAMILY Bet v1-like 588 821 - -
Rops4g01391 828 SMART START_1 336 560 IPR002913 GO:0008289
Rops4g01391 828 FunFam Homeobox-leucine zipper protein HDG1 112 198 - -
Rops4g01391 828 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Rops4g01391 828 Pfam Homeodomain 125 180 IPR001356 GO:0003677
Rops4g01391 828 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 121 825 IPR042160 -
Rops4g01391 828 MobiDBLite consensus disorder prediction 1 46 - -
Rops4g01391 828 Gene3D - 111 198 - -
Rops4g01391 828 Pfam START domain 336 560 IPR002913 GO:0008289
Rops4g01391 828 Gene3D - 405 556 IPR023393 -
Rops4g01391 828 MobiDBLite consensus disorder prediction 86 132 - -
Rops4g01391 828 SUPERFAMILY Bet v1-like 329 560 - -
Rops4g01391 828 SUPERFAMILY Homeodomain-like 108 182 IPR009057 -
Rops4g01391 828 MobiDBLite consensus disorder prediction 89 104 - -
Rops4g01391 828 Coils Coil 176 208 - -
Rops4g01391 828 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Rops4g01391 828 FunFam Homeobox-leucine zipper protein GLABRA 2 336 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01391 Rops-Chr4 35918654 35925765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01391 1 828 Homeobox Transcription Factor Family AT3G61150 64.964 0.0 1050
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops4g01391 START 4.7e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01391 K09338 - gmx:100811873 1422.91