Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01381 ATGGTGGAAGATAGTGTAGATGTGGTTGCAGTTGTTGCACGTTCAACAGAAGACTGGTTGTTACATGCACAGGAACTTGTTCCTGTTGTTCTTGCTAAGGCAAGAGAGGTTAAGGTGTTCCCAGGAAGGTGGAAGATGATCATTTCAAAATTGGAACAGATCCCGACACGGTTATCAGACTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTTTGCAAGGAGCAGTTGCAGGCTGTGTCAAAGTCACTCAAAGAAGCCACGGAATTGGCTGAATTGTGTGTGAAGGAGAAGTACGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTGACTGGGAAACTGGATTTGAATTTAAGGGATTGTGGCCTTTTGATCAAAACCGGTGTGCTTGGTGAGGCTACTTTGCCATTGACAGTGTCTGGTCCTATAGCAGAATCAGATATTGCAACACATAACAATATAAGGGAACTACTTGCACGCCTTCAAATTGGTCATTTGGAGTCAAAACACAAAGCTTTAGACAAACTCTATGATGTCATGAAAGAAGATGAGAAGAATGTTTTAGCTGTTCTTGGTAGGAGCAATGTTGTTGCTTTAGTACAATTGCTTACAGCAACATCTCCAAGGATAAGGGAGAAGACAGTTACTGTTATATGCTCTCTTGTTGAATCGGGTAGCTGCGAAAACTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATAAGACTTGTTGAATCCGGTAGCCCTTTCGGTAAAGAGAAGGCTACGGTATCTCTTCAGAGGCTGTCAATGTCAGCCGAAACAACGCGTGCAATTGTCGGGCATGGTGGGATTCGTCCATTAATTGAGCTTTGTCAAACTGGTGATTCTGTGTCACAAGCTGCTGCTGCTTGCACTTTGAAGAATGTATCAGCTGTTCCTGAAGTGAGACAAGTTCTAGCTGAAGAAGGTATTGTGAGAGTTATGATCAATCTTCTTAACTGTGGAATTTTGTTAGGTTCCAAAGAGTATGCAGCTGAGTGTTTGCAGAATCTCACTGCAAGCAATGAGAATCTAAGAAGGTCTGTTATATCTGAAGGCGGTGTTAGGAGTCTTTTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCAGTTGGAGCATTGAGGAATTTGGTAGCATCAGTTTCTGAGGAAATTTTGGTTTCTCTTGGTTTGCTTCCCCGTTTGGTTCATGTGTTGAAATCTGGATCCTTAGGTGCTCAACAAGCTGCGGCTTCAGTTATATGCCGGGTTTGCAACAACTCTATAGAGATGAAGAAAATGGTTGGTGAAGCTGGGTTGATCCCTCTTCTTATCAAGATGCTTGAGGCTAAAGCAAATAGTGCTAAAGAGATTGCTGCTCAAGCAATTGCAAGCTTAATGGTTCTGTCCCAAAACCGCAGAGAAGTTAAGAAGGATGATAAAAGTGTTCCAAATTTGGTTCAGTTGCTTGATCCAAGTCCACAGAACACTGCAAAAAAATATGCAGTTTCATGCCTTGGATCACTTTCTTCATGTAAGAAATGTAAGAAACTGATGATTTCATATGGAGCAATTGGGTATCTGAAGAAGCTTGTAGAGATGGAAATTCCAGGAGCTAAAAAGTTACTTGAGAGATTGGAAAGAGGGAAATTGAGAAGCTTGTTTAGTAGAAAATAG 1686 0.4211 MVEDSVDVVAVVARSTEDWLLHAQELVPVVLAKAREVKVFPGRWKMIISKLEQIPTRLSDLSSHPCFSKNALCKEQLQAVSKSLKEATELAELCVKEKYEGKLRMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLTVSGPIAESDIATHNNIRELLARLQIGHLESKHKALDKLYDVMKEDEKNVLAVLGRSNVVALVQLLTATSPRIREKTVTVICSLVESGSCENWLVSEGVLPPLIRLVESGSPFGKEKATVSLQRLSMSAETTRAIVGHGGIRPLIELCQTGDSVSQAAAACTLKNVSAVPEVRQVLAEEGIVRVMINLLNCGILLGSKEYAAECLQNLTASNENLRRSVISEGGVRSLLAYLDGPLPQESAVGALRNLVASVSEEILVSLGLLPRLVHVLKSGSLGAQQAAASVICRVCNNSIEMKKMVGEAGLIPLLIKMLEAKANSAKEIAAQAIASLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSSCKKCKKLMISYGAIGYLKKLVEMEIPGAKKLLERLERGKLRSLFSRK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01381 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 559 - -
Rops4g01381 561 Gene3D - 334 549 IPR011989 -
Rops4g01381 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Rops4g01381 561 Gene3D - 152 333 IPR011989 -
Rops4g01381 561 SUPERFAMILY ARM repeat 156 540 IPR016024 -
Rops4g01381 561 SMART arm_5 472 514 IPR000225 GO:0005515
Rops4g01381 561 SMART arm_5 390 429 IPR000225 GO:0005515
Rops4g01381 561 SMART arm_5 430 471 IPR000225 GO:0005515
Rops4g01381 561 SMART arm_5 350 389 IPR000225 GO:0005515
Rops4g01381 561 SMART arm_5 185 225 IPR000225 GO:0005515
Rops4g01381 561 SMART arm_5 308 349 IPR000225 GO:0005515
Rops4g01381 561 SMART arm_5 267 307 IPR000225 GO:0005515
Rops4g01381 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 478 IPR000225 GO:0005515
Rops4g01381 561 Pfam Armadillo/beta-catenin-like repeat 269 306 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01381 Rops-Chr4 35747962 35749647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01381 206 480 U-box Gene Family AT3G54790 30.108 8.57e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01381 - - gmx:100809488 933.71