Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01379 ATGAGGCCCGTCTTTTGCGGAAACCTGGATTTCGACTCTCGACAATCTGATGTTGAGAGGCTCTTCAGAAGATACGGGAAGGTTGATCGAGTGGACATGAAATCAGGATTACATGGAAAGTTGGAATGTCCATGCTCTTCTTGGATGGACTGTTCAATTTCCGACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTAGCAGGGTTTGCTTTTGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGACTTGATAGAACTGAATTTGGTAGAAAGGGGCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGGGACAGTAGAAGGCCTGGTGATTCAAGAAAATCTTCAACAAATACGAAACCATCCAAGACTTTGTTTGTTATAAACTTTGATCCTGTTCACACCAGGACAAGGGATCTGGAGAGACACTTTGATTCCTATGGGAAAATATTGAACATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGCAGGATGCCACTAGAGCTCTGGATGCAACTAACCTGGGCAAGTTTATGGATCGTGTTATCACAGTAGAGTATGCTATAAGAGATGATGATGACAGAAGGAATGGACACAGTCCTGATAGAAGAGGTCATGAATCCCCTGATGGGAGATATGGTCGTGGCAGATCACCAAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAACTAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCACCACCCCGAGATAGGTCACGATCCTGA 852 0.4437 MRPVFCGNLDFDSRQSDVERLFRRYGKVDRVDMKSGLHGKLECPCSSWMDCSISDMFQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRPGDSRKSSTNTKPSKTLFVINFDPVHTRTRDLERHFDSYGKILNIRIRRNFAFIQFESQQDATRALDATNLGKFMDRVITVEYAIRDDDDRRNGHSPDRRGHESPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPELRGSPKYERAESPINGRYDSRSPPPRDRSRS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01379 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 200 IPR000504 GO:0003723
Rops4g01379 283 MobiDBLite consensus disorder prediction 202 223 - -
Rops4g01379 283 Gene3D - 1 107 IPR012677 -
Rops4g01379 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 108 IPR000504 GO:0003723
Rops4g01379 283 MobiDBLite consensus disorder prediction 254 283 - -
Rops4g01379 283 MobiDBLite consensus disorder prediction 106 127 - -
Rops4g01379 283 MobiDBLite consensus disorder prediction 202 283 - -
Rops4g01379 283 SUPERFAMILY RNA-binding domain, RBD 2 201 IPR035979 GO:0003676
Rops4g01379 283 MobiDBLite consensus disorder prediction 106 120 - -
Rops4g01379 283 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 131 269 - -
Rops4g01379 283 Gene3D - 108 246 IPR012677 -
Rops4g01379 283 FunFam Serine/arginine-rich splicing factor RS31 121 211 - -
Rops4g01379 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 193 IPR000504 GO:0003723
Rops4g01379 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 97 IPR000504 GO:0003723
Rops4g01379 283 SMART rrm1_1 3 104 IPR000504 GO:0003723
Rops4g01379 283 SMART rrm1_1 130 196 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01379 Rops-Chr4 35735225 35738488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01379 70 191 Eukaryotic Initiation Factors Gene Family AT4G34110 28.682 3.19e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01379 K12893 - gmx:100797778 416.001