Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01378 ATGGCAGGAGCTGAAGCTACAAAATATGCTTCAACCACTGCTACAAACAATATAGGCAAATCAAACAAACCAAGCATGAGAAGGTTCATTGGGGTGAGGCAAAGGCCTTCAGGAAGGTGGGTAGCTGAGATCAAAGACTCATCTCAACATGTGAGGTTATGGCTTGGAACCTATGACACACCAGAAGAAGCTGCTAGGGCTTATGATGAAGCAGCAAGAGCTTTGCGTGGTGAAAATGCAAGAACCAACTTTGCTTCTGTGAACCAAGTCACCAACCAATCAGGTTTTGACCCATGTAGTGAAGGGCTATCACAAGCTGGTTCTGATGTAAGACATGGTTTAAGCTTTGCTTCCTTGAAAGCCAAGTTGAGCAAGAATCTCCAAAGCATTATGGCAAGGGCTAGTGATAACAAGTCCTCATCAAAGAGCAGGGTGAGTGATCACTTTACCTTTGCTAGTATATTCAACCGTAGTAGGAGTTACCAGTACCAAATCCCTTCAGTGGATATGAAAAACATGGAGAAAGTGGTGCAGCCTAGTATTATTGTGCCCCCTTTAGATGTTGAATACCCTGCTCCTCCTAATTGGGAAACTTCTAGTGTCTCTGATTGTAGTTCTGAATGGGTGGGGTTTCAGCAACCTGGGTTGGACTCTGATGGGTCTGAGGTTAGTGTTGGTGACCAAGGGTTCTTGGATCAACTCATGGGGTGGATTGATAGCCCTGCTGATGTTTGTGCTAGTGAAGGTTCAAGGAGTAAGAGGTTCAAAGTTTCTTCTTCTGTGCTTGTGCCTCCAACTTTCTCTGGGTCTCCTTATGAGTGTGGCTCTCCATATAGCAGTTGTGGCTCCCCATGTAATGGTTATGCCTCTCCTTACTATGGTAGGAAGTAA 891 0.4501 MAGAEATKYASTTATNNIGKSNKPSMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFASVNQVTNQSGFDPCSEGLSQAGSDVRHGLSFASLKAKLSKNLQSIMARASDNKSSSKSRVSDHFTFASIFNRSRSYQYQIPSVDMKNMEKVVQPSIIVPPLDVEYPAPPNWETSSVSDCSSEWVGFQQPGLDSDGSEVSVGDQGFLDQLMGWIDSPADVCASEGSRSKRFKVSSSVLVPPTFSGSPYECGSPYSSCGSPCNGYASPYYGRK* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01378 296 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Rops4g01378 296 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Rops4g01378 296 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Rops4g01378 296 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Rops4g01378 296 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Rops4g01378 296 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Rops4g01378 296 MobiDBLite consensus disorder prediction 1 25 - -
Rops4g01378 296 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Rops4g01378 296 FunFam ethylene-responsive transcription factor RAP2-11 27 86 - -
Rops4g01378 296 SUPERFAMILY DNA-binding domain 29 85 IPR016177 GO:0003677
Rops4g01378 296 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 146 - -
Rops4g01378 296 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01378 Rops-Chr4 35723123 35724013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01378 12 86 AP2-EREBP Transcription Factor Family AT5G19790 61.333 2.12e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops4g01378 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01378 K09286 - gmx:100799444 353.599