Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01377 ATGGGTTCAGGTACTAATTTGGTGACTACAATCATTGGGTTTGGATTGAGTGCAACTTTCATTGTGTTTGTCTGTGCAAGAATAATTTGTGGAAGAATAAGATGGCGTGTGGGATCAAGGACTATATATGAATCAAGAACAGATATAGAACGGTCAGAATATCATGCTAATGACCCTGAACCTGCTTTTGTTGCTGCAATCCCCACTTGGAATTTCAATCAAGAGGCCTTCAGTTCCATTGAAAGTACACAGTGTGTGATATGTTTATCAGAGTACAAAGAAAAGGAATTATTACGCATCATACCTTATTGTGGCCACAGTTTTCATCTTTCTTGCATTGATATGTGGCTGAGAAAACAATCCACGTGTCCAGTGTGCCGTTTGCCATTGCAGAATGCTTCTGAAACAAAACATGTGAGATCTGTAACATTTACCATTAACCAATCTCTTAATGAGTCTAATGCTTCAGAAAGGAACACAGGAAATGAGAGGCAAGTTGAATCCAATGTCAGTAACTCCACACAATTGACTTCTGGAGAATCAGAAGTAAGGCAGTGA 558 0.3907 MGSGTNLVTTIIGFGLSATFIVFVCARIICGRIRWRVGSRTIYESRTDIERSEYHANDPEPAFVAAIPTWNFNQEAFSSIESTQCVICLSEYKEKELLRIIPYCGHSFHLSCIDMWLRKQSTCPVCRLPLQNASETKHVRSVTFTINQSLNESNASERNTGNERQVESNVSNSTQLTSGESEVRQ* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01377 185 MobiDBLite consensus disorder prediction 150 185 - -
Rops4g01377 185 CDD RING-H2_EL5-like 84 127 - -
Rops4g01377 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 137 IPR013083 -
Rops4g01377 185 SMART ring_2 85 126 IPR001841 -
Rops4g01377 185 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Rops4g01377 185 PANTHER OS11G0150450 PROTEIN 1 168 - -
Rops4g01377 185 Pfam Ring finger domain 84 127 IPR001841 -
Rops4g01377 185 SUPERFAMILY RING/U-box 77 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01377 Rops-Chr4 35705061 35706847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01377 61 134 C3H Transcription Factor Family AT4G33565 41.892 3.40e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01377 - - gmx:100800505 276.944