LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops4g01374	ATGCTTTTTAGTCTTGGATATGAAGTTGTGACTGCTACACTTGCTTCTGATGCATTATCCATTATTGTGGAGAAAAAGAATGAGCTTAACCTTGTGCTTGTGGAGGCTTGCTTGCCTGACATGGACATATCTGAGCTCACAGAGAAAATAAGAGAAAGCTCTGATCTGCCATCTTTCATTATGGCTGATGATGATAATCAGCATTCCATATCAAAAGCACTATGTAGAGGAGCTACATTGTGTTTTAGAAAGCCAGTTTTGATGTCTAATCTAAGTGGCTTATGGCGATTTGCAAAGCAGAACAGAAAATGTAAAACAATAGCCAGTGAAGATGTACAAGGCTTTTGGTGGCGTCAGGTGACTATAGTAAAGAAGGGTCTAGAATGCCAACCATTCGTCAGTATAGGAAAACACAGTCTCCGAAGTGCAAAACGTGAGGAGCAAGAACTTCGTGATAAAGATAATGGGGGAGGAAAAATTGAATCATCAGGCCAGAAAAGGAAAAGGGTTTCCTGGACTGATGATTTACAAATGAAGTTCTTTGCAGCTGTTAAATTAGCAGGAATTAATGCTCCTCCGAGGAAAATGCACCAGCTGATGAATGTGCCGGGACTTACAAAAGAGCATGTTTCAAACTATTTACAGAAATATCGTCAATCTATGAGAGAAAGAGCTAAAGTAAAACACCTTCCATTCCCAAAGCAGCAAGGTGTGATCCACAATCAAGCTTTCCAGGGCAACAATCAGAATGATCTCAGTAATGGTATGTCATGGAGACCGCAACGTGTTGCACACAATGATAATGGGTACATCAGTGTGGTTGAAAATACCACTGATGAATTTCTCTCCTATGTGGATTCCATTGCTGAACAAAGTGAAATGCATTATGCAACACTGCTAGCCAATGACATGTGCCATCACTTTTCCCCAAAACTTCCTGTTCCTCTACTACCATCAGATGAAAAAAAATATTACCTTTATGGGGCTGAAGCAGGAAAGATTGATGAAATTTTCTATAGTTCAAAAGGAACGCGGCAGTTTAGTGATGAGGATTTAACTACATGGTTATCAAGCCTTACTATCAGGTTCTAA	1092	0.3984	MLFSLGYEVVTATLASDALSIIVEKKNELNLVLVEACLPDMDISELTEKIRESSDLPSFIMADDDNQHSISKALCRGATLCFRKPVLMSNLSGLWRFAKQNRKCKTIASEDVQGFWWRQVTIVKKGLECQPFVSIGKHSLRSAKREEQELRDKDNGGGKIESSGQKRKRVSWTDDLQMKFFAAVKLAGINAPPRKMHQLMNVPGLTKEHVSNYLQKYRQSMRERAKVKHLPFPKQQGVIHNQAFQGNNQNDLSNGMSWRPQRVAHNDNGYISVVENTTDEFLSYVDSIAEQSEMHYATLLANDMCHHFSPKLPVPLLPSDEKKYYLYGAEAGKIDEIFYSSKGTRQFSDEDLTTWLSSLTIRF*	364

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops4g01374	363	Gene3D	-	1	112	-	-
Rops4g01374	363	SUPERFAMILY	Homeodomain-like	165	222	IPR009057	-
Rops4g01374	363	Gene3D	-	164	223	-	-
Rops4g01374	363	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	1	248	IPR045279	GO:0009736
Rops4g01374	363	MobiDBLite	consensus disorder prediction	143	168	-	-
Rops4g01374	363	ProSiteProfiles	Response regulatory domain profile.	1	99	IPR001789	GO:0000160
Rops4g01374	363	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	168	219	IPR006447	GO:0003677
Rops4g01374	363	SUPERFAMILY	CheY-like	1	102	IPR011006	-

Showing 1 to 8 of 8 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops4g01374	Rops-Chr4	35687811	35690804	Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops4g01374	18	248	Response Regulator Gene Family	AT3G16857	29.435	1.38e-23	100

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Rops4g01374		None	None	None

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops4g01374	-		-	psat:127075863	268.085

Showing 1 to 1 of 1 entries

Previous1Next