Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01374 ATGCTTTTTAGTCTTGGATATGAAGTTGTGACTGCTACACTTGCTTCTGATGCATTATCCATTATTGTGGAGAAAAAGAATGAGCTTAACCTTGTGCTTGTGGAGGCTTGCTTGCCTGACATGGACATATCTGAGCTCACAGAGAAAATAAGAGAAAGCTCTGATCTGCCATCTTTCATTATGGCTGATGATGATAATCAGCATTCCATATCAAAAGCACTATGTAGAGGAGCTACATTGTGTTTTAGAAAGCCAGTTTTGATGTCTAATCTAAGTGGCTTATGGCGATTTGCAAAGCAGAACAGAAAATGTAAAACAATAGCCAGTGAAGATGTACAAGGCTTTTGGTGGCGTCAGGTGACTATAGTAAAGAAGGGTCTAGAATGCCAACCATTCGTCAGTATAGGAAAACACAGTCTCCGAAGTGCAAAACGTGAGGAGCAAGAACTTCGTGATAAAGATAATGGGGGAGGAAAAATTGAATCATCAGGCCAGAAAAGGAAAAGGGTTTCCTGGACTGATGATTTACAAATGAAGTTCTTTGCAGCTGTTAAATTAGCAGGAATTAATGCTCCTCCGAGGAAAATGCACCAGCTGATGAATGTGCCGGGACTTACAAAAGAGCATGTTTCAAACTATTTACAGAAATATCGTCAATCTATGAGAGAAAGAGCTAAAGTAAAACACCTTCCATTCCCAAAGCAGCAAGGTGTGATCCACAATCAAGCTTTCCAGGGCAACAATCAGAATGATCTCAGTAATGGTATGTCATGGAGACCGCAACGTGTTGCACACAATGATAATGGGTACATCAGTGTGGTTGAAAATACCACTGATGAATTTCTCTCCTATGTGGATTCCATTGCTGAACAAAGTGAAATGCATTATGCAACACTGCTAGCCAATGACATGTGCCATCACTTTTCCCCAAAACTTCCTGTTCCTCTACTACCATCAGATGAAAAAAAATATTACCTTTATGGGGCTGAAGCAGGAAAGATTGATGAAATTTTCTATAGTTCAAAAGGAACGCGGCAGTTTAGTGATGAGGATTTAACTACATGGTTATCAAGCCTTACTATCAGGTTCTAA 1092 0.3984 MLFSLGYEVVTATLASDALSIIVEKKNELNLVLVEACLPDMDISELTEKIRESSDLPSFIMADDDNQHSISKALCRGATLCFRKPVLMSNLSGLWRFAKQNRKCKTIASEDVQGFWWRQVTIVKKGLECQPFVSIGKHSLRSAKREEQELRDKDNGGGKIESSGQKRKRVSWTDDLQMKFFAAVKLAGINAPPRKMHQLMNVPGLTKEHVSNYLQKYRQSMRERAKVKHLPFPKQQGVIHNQAFQGNNQNDLSNGMSWRPQRVAHNDNGYISVVENTTDEFLSYVDSIAEQSEMHYATLLANDMCHHFSPKLPVPLLPSDEKKYYLYGAEAGKIDEIFYSSKGTRQFSDEDLTTWLSSLTIRF* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01374 363 Gene3D - 1 112 - -
Rops4g01374 363 SUPERFAMILY Homeodomain-like 165 222 IPR009057 -
Rops4g01374 363 Gene3D - 164 223 - -
Rops4g01374 363 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 248 IPR045279 GO:0009736
Rops4g01374 363 MobiDBLite consensus disorder prediction 143 168 - -
Rops4g01374 363 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
Rops4g01374 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 168 219 IPR006447 GO:0003677
Rops4g01374 363 SUPERFAMILY CheY-like 1 102 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01374 Rops-Chr4 35687811 35690804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01374 18 248 Response Regulator Gene Family AT3G16857 29.435 1.38e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops4g01374 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01374 - - psat:127075863 268.085