Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01371 ATGATGTGTTTCAGTTCTCTCAGATATGTTAGAATTCCTCCTGGACCCAAGCTTTTGATTCTTGACCACAGTTTCTTTGCTTTCGAGTATTTTCTCTCTTTTGCTCTTTCTTTCCCTCTGTTCATTCCGACAAATCACACGAATTCGAATTCTGAAGGTTTTCACAGCTTCTTCACAACTCAGAGCATTATGGATATCAAAGTTGCAAGGAGAGCTGAACGAACATGTGGAACAACATGTAAATATTGGCTAGCTGGGAGATGCAACAGAAACCCTTGTAGATTCTCACACGCATTACCATCTAATGCTTATTGTAACGCCAATACTGCACACTGTTATGGAAAGAAGCCCCATTCATCTGAGAAGACCCCTAAAAATAATTCAAAGACAGTGTTGATCAGAAACAATGGACATGGAGGAGATGGGACACATCTTACGGAGGCTTATCAGAAGCCATCACAAAGTATCTGTAGATACTGGATGAATGGCAATTGTGTACATGGTGACCAGTGCAAGAATTTACATTCCTTGTTTTATGGTGATGGGTTTTCCACATTGGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGGATTGCACTTCCAGTTGGATCGGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTCGGACATGGGACTGCCATACTGGCAAATGTACTAATGTGATAAATCTTGGAGCTGAAGTTACCTCTTTAATCAGTGAGGGACCATGGATTTTTGTTGGTTTAGGGAATGCTGTCAAGGCTTGGAATATTCAGACTGCTCAAGAGTATATTCTTAATGAACCTAAGGGGCGAGTCCTTACAATGATGGTTGGCAATGATACACTTTTTGCCGGAGCAGAGGATGGTGTAATTTCTGCTTGGAGAGGCAGCTCGGATGCTAATTCCCCTTTTGAACTGATTGCATCACTAAGTGACCACACTAAAGCTGTGGTTTGCCTGACTGTTGGAGGCAAGAGGCTGTACTCAGGGTCCATGGACCAAAGCATCAAGGTTTGGGACATGGATACATTACAGTGTAAAATGACACTCAATGAGCATACTGGTGTAGTCACATCCCTTATTTGTTGGGACCATTATCTATTATCCGGTTCATCTGACTGCACTATTACGGTCTGGGCTGCCACTGAAGAGGGAACTTTGAAAGTGACATATACACAACCTGTTGAAAATGGTGTTGTTGCACTTTGTGGAATGACTGATGCAGAATCCAAGCACATATTATTTTGCTCGTGCAAGGACAATTCAGTTCGCATGTATGAATTGCCATCGTTTTCAGAGAGGGGTCGATTATTTGCAAGACAAGAAGTTCGATCAATAGAGATTGGTCCTGGTGGACTCTTCTTCACTGGAGATGGAACTGGATTGGTGAATGTGTGCAAATGGTTGGAAGAGCCCAAAGTGCCATCATCCTCTTGA 1446 0.4267 MMCFSSLRYVRIPPGPKLLILDHSFFAFEYFLSFALSFPLFIPTNHTNSNSEGFHSFFTTQSIMDIKVARRAERTCGTTCKYWLAGRCNRNPCRFSHALPSNAYCNANTAHCYGKKPHSSEKTPKNNSKTVLIRNNGHGGDGTHLTEAYQKPSQSICRYWMNGNCVHGDQCKNLHSLFYGDGFSTLAKLHEHKKVVTGIALPVGSDKLYSGSTDGTVRTWDCHTGKCTNVINLGAEVTSLISEGPWIFVGLGNAVKAWNIQTAQEYILNEPKGRVLTMMVGNDTLFAGAEDGVISAWRGSSDANSPFELIASLSDHTKAVVCLTVGGKRLYSGSMDQSIKVWDMDTLQCKMTLNEHTGVVTSLICWDHYLLSGSSDCTITVWAATEEGTLKVTYTQPVENGVVALCGMTDAESKHILFCSCKDNSVRMYELPSFSERGRLFARQEVRSIEIGPGGLFFTGDGTGLVNVCKWLEEPKVPSSS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01371 481 SUPERFAMILY CCCH zinc finger 152 176 IPR036855 GO:0046872
Rops4g01371 481 Gene3D - 73 178 - -
Rops4g01371 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Rops4g01371 481 PANTHER - 114 480 IPR044715 -
Rops4g01371 481 Pfam WD domain, G-beta repeat 348 382 IPR001680 GO:0005515
Rops4g01371 481 Pfam WD domain, G-beta repeat 308 343 IPR001680 GO:0005515
Rops4g01371 481 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Rops4g01371 481 ProSiteProfiles Zinc finger C3H1-type profile. 151 178 IPR000571 GO:0046872
Rops4g01371 481 Gene3D - 282 480 IPR015943 GO:0005515
Rops4g01371 481 SUPERFAMILY WD40 repeat-like 189 473 IPR036322 GO:0005515
Rops4g01371 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 352 IPR001680 GO:0005515
Rops4g01371 481 SMART c3hfinal6 151 177 IPR000571 GO:0046872
Rops4g01371 481 SMART c3hfinal6 75 99 IPR000571 GO:0046872
Rops4g01371 481 ProSiteProfiles Zinc finger C3H1-type profile. 79 100 IPR000571 GO:0046872
Rops4g01371 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 346 - -
Rops4g01371 481 SMART WD40_4 261 298 IPR001680 GO:0005515
Rops4g01371 481 SMART WD40_4 306 343 IPR001680 GO:0005515
Rops4g01371 481 SMART WD40_4 346 383 IPR001680 GO:0005515
Rops4g01371 481 SMART WD40_4 433 470 IPR001680 GO:0005515
Rops4g01371 481 SMART WD40_4 182 221 IPR001680 GO:0005515
Rops4g01371 481 SMART WD40_4 389 430 IPR001680 GO:0005515
Rops4g01371 481 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Rops4g01371 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 221 - -
Rops4g01371 481 Gene3D - 179 281 IPR015943 GO:0005515
Rops4g01371 481 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Rops4g01371 481 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Rops4g01371 481 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01371 Rops-Chr4 35634252 35651028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01371 145 394 Eukaryotic Initiation Factors Gene Family AT2G46290 24.000 1.65e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops4g01371 WD40 0.0017 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01371 - - gmx:100787799 620.157