Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01370 ATGGATATCAAGGTTGCAAGGAGAGCTGAACAGCCATGTGGAACAACATGTAAATATTGGCTAGCTGGGAGATGCAACAGAAACCCTTGTAGATTTTCACACGCGTTACCATCTAATGCTTATTATAATGCCAATACTGCACACTATTATGGAAGAAAGCCCCATTCTTTATCTGAGAAGACCCCTAAAAATAATTCAAAGACAGCATTGACCAGAAACAGTGGAGATGCGACACATCTTATGGAGGCTTATCAGAAGTCATCACCAAGTGTCTGTAGATACTGGATGAATGGCAATTGTGTACATGGTGACCAGTGCAAGAATTTACATTCCTGGATTTATGGTGATGGGTTTTCCACGTTGGCAAAGCTTCATGAACACAAGAAGGGTGTCACTGGGATTGCACTTCCAGTTGGATCGGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTCGGACATGGGACTGCCATACTGGTAAATGTACTAATGTGATAAATCTTGGTGCTGGAGTTACCTCTTTAATCAGTGAGGGTCCATGGATTTTTGTTGGTCTGTGGAATGCTGTCAAGGCTTGGAATATTCAGACTGCTCAAGAGTACACTCTTAATGGACCTAAGGGGCGAGTCCTTGCCATGATTGTTGGCAATGATACACTTTTTGCTGGAGCAGAGGATGGTGTAATTTCTGCATGGAGAGGCAGCTCTGATGCTAATTCCCCTTTTGAATTGGTTGCATCACTAAGTGGCCACACTAAAGCAGTGGTTTGCCTTACTGTTGGAGGCAAGAGGCTGTACTCTGGGTCCATGGACCAAAGCATAAAGGTTTGGGACATGGATACATTACAGTGTAAAATGACACTGAATGAGCATACTGGCATAGTCACATCCCTTATTTGTTGGGACCATTATTTGTTATCCGGTTCATCTGACCGCACTATTAAGGTTTGGGTTGCCACTGAAGAGGGAACTTTGAAAGTGACATATACACACCCTGTTGAAAATGGTGTTGTTGCGCTTTCTGGAATGACTGATGCAGAAGGCAAGCATATATTATTTTGCTCGTGCAAGGACAATTCAGTTCGCATGTATGAATTGCCATCGTTTTCAGAGAGGGGTCGATTATTTGCAAGACAAGAAGTTCGGTCAATAGAGATTGGTCCTGGTGGACTCTTCTTCACTGGAGATGGCACTGGTTTGGTGATGGTGTGGAAATGGTTGGAAGAGCCCAAAGTGCTATCCTCTTGA 1248 0.4367 MDIKVARRAEQPCGTTCKYWLAGRCNRNPCRFSHALPSNAYYNANTAHYYGRKPHSLSEKTPKNNSKTALTRNSGDATHLMEAYQKSSPSVCRYWMNGNCVHGDQCKNLHSWIYGDGFSTLAKLHEHKKGVTGIALPVGSDKLYSGSTDGTVRTWDCHTGKCTNVINLGAGVTSLISEGPWIFVGLWNAVKAWNIQTAQEYTLNGPKGRVLAMIVGNDTLFAGAEDGVISAWRGSSDANSPFELVASLSGHTKAVVCLTVGGKRLYSGSMDQSIKVWDMDTLQCKMTLNEHTGIVTSLICWDHYLLSGSSDRTIKVWVATEEGTLKVTYTHPVENGVVALSGMTDAEGKHILFCSCKDNSVRMYELPSFSERGRLFARQEVRSIEIGPGGLFFTGDGTGLVMVWKWLEEPKVLSS* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01370 415 PANTHER - 48 412 IPR044715 -
Rops4g01370 415 MobiDBLite consensus disorder prediction 53 72 - -
Rops4g01370 415 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Rops4g01370 415 SMART c3hfinal6 12 36 IPR000571 GO:0046872
Rops4g01370 415 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Rops4g01370 415 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Rops4g01370 415 PRINTS G protein beta WD-40 repeat signature 305 319 IPR020472 -
Rops4g01370 415 Gene3D - 108 258 IPR015943 GO:0005515
Rops4g01370 415 Gene3D - 259 414 IPR015943 GO:0005515
Rops4g01370 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 317 IPR001680 GO:0005515
Rops4g01370 415 SUPERFAMILY WD40 repeat-like 95 405 IPR036322 GO:0005515
Rops4g01370 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 281 - -
Rops4g01370 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 156 - -
Rops4g01370 415 Pfam WD domain, G-beta repeat 283 317 IPR001680 GO:0005515
Rops4g01370 415 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Rops4g01370 415 Pfam WD domain, G-beta repeat 120 156 IPR001680 GO:0005515
Rops4g01370 415 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Rops4g01370 415 SMART WD40_4 117 156 IPR001680 GO:0005515
Rops4g01370 415 SMART WD40_4 196 233 IPR001680 GO:0005515
Rops4g01370 415 SMART WD40_4 368 405 IPR001680 GO:0005515
Rops4g01370 415 SMART WD40_4 241 278 IPR001680 GO:0005515
Rops4g01370 415 SMART WD40_4 281 318 IPR001680 GO:0005515
Rops4g01370 415 SMART WD40_4 324 365 IPR001680 GO:0005515
Rops4g01370 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 165 IPR001680 GO:0005515
Rops4g01370 415 ProSitePatterns Trp-Asp (WD) repeats signature. 265 279 IPR019775 -
Rops4g01370 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 287 IPR001680 GO:0005515
Rops4g01370 415 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Rops4g01370 415 Gene3D - 13 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01370 Rops-Chr4 35631625 35641400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01370 80 311 Eukaryotic Initiation Factors Gene Family AT2G46290 24.806 6.18e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops4g01370 WD40 0.0012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01370 - - gmx:100787799 632.869