Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01366 ATGGCAGAGGAAGCTTCTGGAAAAGTTGATCTCAGGCTCGGAGAACCCAAGGGGCTCAAAGAAGAGCCCGAAACGGAAGATGGGTCGCCGTCATCGGCGGCGATTAGGGTCATGCCTGTGGCGGTTCACATGCCGGCGGGGATGTCTATGTCCATGTCCATGCAAGTGAACAAGGCTTTGGCACAAGCCCAACCACCCCAGAAGCGGGCCTCCACCAAAGACCGTCACACCAAGGTGGAGGGTCGAGGACGGAGGATCCGAATGCCCGCCACGTGTGCAGCCCGGATCTTTCAACTAACCCGAGAACTCGGACACAAATCCGACGGCGAAACCATACGGTGGCTACTCGAACACGCCGAGCCAGCCATCATCGCCGCCACCGGAACCGGTACCGTCCCCGCCATAGCTATGTCCGTTAACGGAACTCTAAAGATCCCAACCACTCCTTCAAATAAAAACTCCGACCCGGAACCCGACCCACCCGAAAAGAAGAAACGCAAACGACCCGCGAATAGTGCTTATGTCGACATAAACGACGGCGCCGTTTCAGTTTCTGCAGGCTTAACAACCTCGAACCAGAACCTAACTAACTCCACTACCACCGCGACAATTCCGCAACAACAAACGGTTATTCCGTTACCGCAAGGTGTGGTTCCCGTGTGGGCCATACCTTCAAACGCCGTCGTTCCAGCCGCAAACGGGTTCTTCGTTGTTCCTTCGATAACAGCAACGAATCAGCCACAATTTTTCACCGTGGCTAGACCAATCTCCGCTTTCGTTTCCTCCATGGTAACACCGGTTCAACTTCAACAAAATTCGTCAACGAACACGTGTTCCACTTCTCCGTCGTCGAAATCTCCGGCGAGAGCGACGGTTATGGCTCCGACCACCGTTACCCCCACCGCAGCAACAACGACCACCACGACGCATATGCTGAGGGATTTCTCGTTGGAGATTTATGATAAGAGAGAGCTTCAATTCATGTCGAGGTCTTCTTCGAAGCATTGA 1008 0.5417 MAEEASGKVDLRLGEPKGLKEEPETEDGSPSSAAIRVMPVAVHMPAGMSMSMSMQVNKALAQAQPPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTPSNKNSDPEPDPPEKKKRKRPANSAYVDINDGAVSVSAGLTTSNQNLTNSTTTATIPQQQTVIPLPQGVVPVWAIPSNAVVPAANGFFVVPSITATNQPQFFTVARPISAFVSSMVTPVQLQQNSSTNTCSTSPSSKSPARATVMAPTTVTPTAATTTTTTHMLRDFSLEIYDKRELQFMSRSSSKH* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01366 335 MobiDBLite consensus disorder prediction 60 82 - -
Rops4g01366 335 MobiDBLite consensus disorder prediction 1 33 - -
Rops4g01366 335 MobiDBLite consensus disorder prediction 156 172 - -
Rops4g01366 335 MobiDBLite consensus disorder prediction 1 27 - -
Rops4g01366 335 Pfam TCP family transcription factor 71 150 IPR017887 -
Rops4g01366 335 MobiDBLite consensus disorder prediction 143 172 - -
Rops4g01366 335 ProSiteProfiles TCP domain profile. 72 126 IPR017887 -
Rops4g01366 335 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 34 323 IPR005333 GO:0003700
Rops4g01366 335 MobiDBLite consensus disorder prediction 273 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01366 Rops-Chr4 35593474 35594894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01366 65 334 TCP Transcription Factor Family AT2G45680 57.877 1.27e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops4g01366 TCP 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01366 - - gmx:100804760 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01366 4 35593474 35594894 Rops4g01366 4 35593474 35594894 ECH